View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8559_high_3 (Length: 309)
Name: NF8559_high_3
Description: NF8559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8559_high_3 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 18327 - 18610
Alignment:
| Q |
10 |
cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18327 |
cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta |
18426 |
T |
|
| Q |
110 |
atggatgtaattaatatttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18427 |
atggatgtaattaatatttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg |
18526 |
T |
|
| Q |
210 |
atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttcc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18527 |
atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttcc |
18610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 28510036 - 28509767
Alignment:
| Q |
10 |
cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| |||||||||||||||| ||||| || | |
|
|
| T |
28510036 |
cagagacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaattgtgttagaatttga |
28509937 |
T |
|
| Q |
110 |
atggatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa |
206 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |
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|
| T |
28509936 |
atggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaag |
28509837 |
T |
|
| Q |
207 |
ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagct |
276 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
28509836 |
ccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgtaccaccgcattgtgcatataaagct |
28509767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 28184771 - 28185043
Alignment:
| Q |
10 |
cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| |||||||||||||| | | ||||| |||| |
|
|
| T |
28184771 |
cagagacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaactgcgttagaatttta |
28184870 |
T |
|
| Q |
110 |
atggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa |
206 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||| |||||||||| |
|
|
| T |
28184871 |
atggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaac |
28184970 |
T |
|
| Q |
207 |
ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||| |
|
|
| T |
28184971 |
ctgatactaccgtcaaaccttctcaggtaaatcatgtaatgtcgtaccaccgcgttgtgcatataaagctaaa |
28185043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 28480853 - 28480584
Alignment:
| Q |
10 |
cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta |
109 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| || | || |||| |||||||||||||||| ||||| || | |
|
|
| T |
28480853 |
cagaaacagagcatgaacttgtggaaaatgttactgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaattgtgttagaatttga |
28480754 |
T |
|
| Q |
110 |
atggatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa |
206 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||| || |||| ||| |||||||||||| |||||||||| |
|
|
| T |
28480753 |
atggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaag |
28480654 |
T |
|
| Q |
207 |
ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagct |
276 |
Q |
| |
|
| |||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
28480653 |
ccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcataaaaagct |
28480584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 99 - 293
Target Start/End: Original strand, 28148993 - 28149190
Alignment:
| Q |
99 |
ttagatatttaatggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtcc |
195 |
Q |
| |
|
||||||||||||| |||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||| ||| | ||||||||| | |
|
|
| T |
28148993 |
ttagatatttaattgatgcaattaatagctgaagatcattaatgcctatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttc |
28149092 |
T |
|
| Q |
196 |
acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttcc |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28149093 |
acttggagaaactgatactgccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaacaaaaggcatttcc |
28149190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 28082712 - 28082981
Alignment:
| Q |
13 |
agacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatg |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| ||||||||||| |||| | ||||| ||||||| |
|
|
| T |
28082712 |
agacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcgaattgccttagaattttaatg |
28082811 |
T |
|
| Q |
113 |
gatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg |
209 |
Q |
| |
|
||||| || ||| ||| || ||||||||| ||||||||| ||||||||||||||||||| || | ||| | |||||||||| | |||||||||||| |
|
|
| T |
28082812 |
gatgttatgaatcgctgaagatcgttaatgcttctgttcttgtaacaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaactg |
28082911 |
T |
|
| Q |
210 |
atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| |||||| ||| | ||||||||||||||||||||| |
|
|
| T |
28082912 |
atactgccgtcaaaccttttcaggtaaatcatgcaatatcataccaatacattgtgcatataaagctaaa |
28082981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 28160219 - 28160424
Alignment:
| Q |
10 |
cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| || | || |||| |||||||||||||| | | ||||| |||| |
|
|
| T |
28160219 |
cagagacagagcatgaacttgtggaaaatgttcccgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaactgcgttagaatttta |
28160318 |
T |
|
| Q |
110 |
atggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa |
206 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | || ||||||| |||||||||| |
|
|
| T |
28160319 |
atggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcgatggaacagcaacgtctacttggagaac |
28160418 |
T |
|
| Q |
207 |
ctgata |
212 |
Q |
| |
|
|||||| |
|
|
| T |
28160419 |
ctgata |
28160424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 28134729 - 28134845
Alignment:
| Q |
129 |
gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
28134729 |
gatcattaatgcttatgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttc |
28134828 |
T |
|
| Q |
229 |
tcaggtaaatcatgtaa |
245 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
28134829 |
tcaggtaaatcgtgtaa |
28134845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 28054393 - 28054652
Alignment:
| Q |
17 |
agagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatggatg |
116 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||| ||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
28054393 |
agagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaaaattccattagttatttaatggatg |
28054492 |
T |
|
| Q |
117 |
taattaata---tttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatat |
213 |
Q |
| |
|
||||||||| |||| |||| |||| ||||||| ||||| ||| ||||| || |||| |||||| | || | ||||||||| ||||| |
|
|
| T |
28054493 |
taattaatagcggaagatcgttaaagcttttgttcttattaca------gatccatgaactattgatgaagcaacttcatcaatttggagaaattgatac |
28054586 |
T |
|
| Q |
214 |
tgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| || |||| |||||||||||| |||| |
|
|
| T |
28054587 |
tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaa |
28054652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 28064818 - 28065077
Alignment:
| Q |
17 |
agagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatggatg |
116 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||| ||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
28064818 |
agagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaaaattccattagttatttaatggatg |
28064917 |
T |
|
| Q |
117 |
taattaata---tttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatat |
213 |
Q |
| |
|
||||||||| |||| |||| |||| ||||||| ||||| ||| ||||| || |||| |||||| | || | ||||||||| ||||| |
|
|
| T |
28064918 |
taattaatagcggaagatcgttaaagcttttgttcttattaca------gatccatgaactattgatgaagcaacttcatcaatttggagaaattgatac |
28065011 |
T |
|
| Q |
214 |
tgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| || |||| |||||||||||| |||| |
|
|
| T |
28065012 |
tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaa |
28065077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 27979596 - 27979733
Alignment:
| Q |
142 |
tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat |
241 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||||| | |||| || |
|
|
| T |
27979596 |
tatgttcttattacaggagttgatggatgaacaacaaatggagcaacaacgtccacttggagaaactgatgctaccgtcaaaccttctccagaaaataat |
27979695 |
T |
|
| Q |
242 |
gtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||| ||| ||| ||||||| ||||||||||||| |
|
|
| T |
27979696 |
gtaatatagtaccacctcattgtgaatataaagctaaa |
27979733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 11420153 - 11420290
Alignment:
| Q |
142 |
tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat |
241 |
Q |
| |
|
||||||| | ||||||||||||||||||||| || | ||| ||||||||||||||||||| ||||||||| | |||||||||||| |||| |||| |
|
|
| T |
11420153 |
tatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcaggaaaataca |
11420252 |
T |
|
| Q |
242 |
gtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||| ||| | | ||||||||||||||| ||||| |
|
|
| T |
11420253 |
gtaatatagtaccatctcattgtgcatataaaactaaa |
11420290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 28151056 - 28151193
Alignment:
| Q |
142 |
tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat |
241 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||| ||||| |||||| || |||||||| |||| | |||||||||||||||| | |||| || |
|
|
| T |
28151056 |
tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat |
28151155 |
T |
|
| Q |
242 |
gtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||| ||||| |
|
|
| T |
28151156 |
gtaatatagtaccacctcattgtgcatataaatctaaa |
28151193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 27919514 - 27919605
Alignment:
| Q |
188 |
caacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||||||| | |||| ||||||||| ||| ||| ||||||| ||||||||||||| |
|
|
| T |
27919514 |
caacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaa |
27919605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 28003328 - 28003451
Alignment:
| Q |
156 |
aggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaa |
255 |
Q |
| |
|
||||||||||||||||| || ||| ||||| |||||| |||||||||||||||| | |||||||||||||||| | |||| ||||||||| ||| | |
|
|
| T |
28003328 |
aggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggagaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtacca |
28003427 |
T |
|
| Q |
256 |
ccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
|| ||| ||||||||||| ||||| |
|
|
| T |
28003428 |
cctcatcgtgcatataaatctaaa |
28003451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 28161137 - 28161201
Alignment:
| Q |
215 |
gccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||| |
|
|
| T |
28161137 |
gccgtcaaaccttctcaggtaaatcatgtaatgtcgtaacaccgcgttgtgcatataaagctaaa |
28161201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 28507104 - 28507044
Alignment:
| Q |
209 |
gatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcata |
269 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
28507104 |
gatactgccgtcaaaccttctccggtaaatcatgtaatatcgtaccaccacattgtgcata |
28507044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 26114141 - 26114053
Alignment:
| Q |
185 |
caacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaa |
273 |
Q |
| |
|
||||||| |||||||||||||||||||| | || ||||||||||||| | | || ||||||||| ||| | | ||||||||||||||| |
|
|
| T |
26114141 |
caacaacatccacttggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatataaa |
26114053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 28036606 - 28036694
Alignment:
| Q |
191 |
cgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| | |||| | ||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
28036606 |
cgtccacttggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaa |
28036694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 17745397 - 17745345
Alignment:
| Q |
196 |
acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat |
248 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||| ||||||||| |
|
|
| T |
17745397 |
acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatat |
17745345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 19046717 - 19046665
Alignment:
| Q |
196 |
acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat |
248 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||| ||||||||| |
|
|
| T |
19046717 |
acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatat |
19046665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 27459810 - 27459748
Alignment:
| Q |
186 |
aacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat |
248 |
Q |
| |
|
||||| ||||||||| |||||||||| | ||||||||||||||||| |||| ||||||||| |
|
|
| T |
27459810 |
aacaatgtccacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatat |
27459748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 129 - 279
Target Start/End: Complemental strand, 8693052 - 8692902
Alignment:
| Q |
129 |
gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttc |
228 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8693052 |
gatcattaatgcttctgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggagaaactgatattgccggcaaaccttc |
8692953 |
T |
|
| Q |
229 |
tcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa |
279 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
8692952 |
tcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaa |
8692902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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