View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8559_low_1 (Length: 480)
Name: NF8559_low_1
Description: NF8559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8559_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 473
Target Start/End: Complemental strand, 29048047 - 29047589
Alignment:
| Q |
15 |
ttaggaacatcgtacagatcaaacctcacagttccaacaaaatcatcatgtattgtgtccttgtctttgataacaacttcaagagtagttgcttgttgat |
114 |
Q |
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| T |
29048047 |
ttaggaacatcgtacagatcaaacctcacagttccaacaaaatcatcatgtattgtgtccttgtctttgataacaacttcaagagtagttgcttgttgat |
29047948 |
T |
|
| Q |
115 |
tctccttggcaaatgcaaacaccaggttccattcaggactattgtttttctcaaagtggttggtagttcctttgaagtttccaaccttgacaatcacata |
214 |
Q |
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| T |
29047947 |
tctccttggcaaatgcaaacaccaggttccattcaggactattgtttttctcaaagtgattggttgttcctttgaagtttccaaccttgacaatcacata |
29047848 |
T |
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| Q |
215 |
gggatcaaggctaccggtcaaatccatccttggaagatcgcgagctttcacaactcgtacgaaaagatagtccattggttctacaaggtcataggtgctg |
314 |
Q |
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| T |
29047847 |
gggatcaaggctaccggtcaaatccatccttggaagatcgcgagctttcacaactcgtatgaaaagatagtccattggttctacaaggtcataggtgctg |
29047748 |
T |
|
| Q |
315 |
ctaggagatttattactcccccgaagaattcttccaccaatgacttttccacctccaagagaaggacttgtctctttgattacatagtccattgcagacg |
414 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29047747 |
ctaggagaattattactcccgcgaagaattcttccaccaacgacttttccacctccaagagaaggatttgtctctttgattacatagtccattgcagacg |
29047648 |
T |
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| Q |
415 |
ctgctgtgcctgcaaacgctttaacaactttcggagcagacggtccagatttcatctca |
473 |
Q |
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| T |
29047647 |
ctgctgtgcctgcaaacgctttaacaactttcggagcagacggtccagatttcatctca |
29047589 |
T |
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