View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8559_low_4 (Length: 305)
Name: NF8559_low_4
Description: NF8559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8559_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 29681159 - 29680876
Alignment:
| Q |
1 |
ctcttgttttagcaatgtctgattcaaccaacaacaacattaacaccggtgcctctggtggtgcaggttcttcttcccggagaacagacaacaccaaatt |
100 |
Q |
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| T |
29681159 |
ctcttgtttcaacaatgtctgattcaaacaacaacaacattaacaccggtgcctctggtggtgcaggttcttcttcccgaagaacagacaacaccaaatt |
29681060 |
T |
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| Q |
101 |
ccccaccatggataagatttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaa |
200 |
Q |
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| T |
29681059 |
ccccacaatggataagattttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaa |
29680960 |
T |
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| Q |
201 |
gatgttttcggtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatat |
284 |
Q |
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| T |
29680959 |
gatgttttcggtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatat |
29680876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 29667802 - 29667516
Alignment:
| Q |
1 |
ctcttgttttagcaatgtctgattcaaccaacaacaaca---ttaacaccggtgcctctggtggtgcaggttcttcttcccggagaacagacaacaccaa |
97 |
Q |
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| T |
29667802 |
ctcttgttttagcaatgtctgattcaaacaacaacaacaacattaacaccggtgcctctggtggtgcaggttcttcatcccggagaacagacaacaccaa |
29667703 |
T |
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| Q |
98 |
attccccaccatggataagatttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatg |
197 |
Q |
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| T |
29667702 |
attccccaccatggataagattttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatg |
29667603 |
T |
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| Q |
198 |
caagatgttttcggtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatat |
284 |
Q |
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| T |
29667602 |
caagatgttttcgctccccgacggtaaggccaagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatat |
29667516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 117 - 292
Target Start/End: Complemental strand, 29686842 - 29686668
Alignment:
| Q |
117 |
atttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcggtcccc |
216 |
Q |
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| T |
29686842 |
attttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacacgaacaaaaaaaagttccctaccatgcaagatgttttcggtcacc |
29686743 |
T |
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| Q |
217 |
gacggtaaggccgagacccttcagatccaatga--ctcgccatcttcaacttgaaccattatatttatatctacgtct |
292 |
Q |
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| T |
29686742 |
ggcgataaggccaagacc---aagatccaaggactctcgccatcttcaacttgcaccgttatatttatatctaggtct |
29686668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 29690370 - 29690442
Alignment:
| Q |
118 |
tttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccc |
190 |
Q |
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| T |
29690370 |
ttttcggtaataggccaccccgtagagagagcactggtgatgccaataacaaaaccaaaggtactaagttccc |
29690442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 29719085 - 29719146
Alignment:
| Q |
129 |
aggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccc |
190 |
Q |
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| T |
29719085 |
aggccaccccatagagagagcactggtgatgccaataacaaaaccaaaggtactaagttccc |
29719146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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