View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8559_low_7 (Length: 287)
Name: NF8559_low_7
Description: NF8559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8559_low_7 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 46223082 - 46222808
Alignment:
| Q |
1 |
cttccaccattctcttactggtcttctcttctcttttt-caaatcaccctttctctttccttcatccattgattcccaccactccaatttcttcttcatc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46223082 |
cttccaccattctcttactggtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccaccactccaatttcttcttcatc |
46222983 |
T |
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| Q |
100 |
ttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatccaatccatcacataatccttca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46222982 |
ttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatccaatccatcacataatccttca |
46222883 |
T |
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| Q |
200 |
cacttccactcttcttcaatccaacaccaaccatctccctctcatattcctcaaagttagtattaacactctctg |
274 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46222882 |
cacttccactcttcttcaatccaccaccaaccatctccctctcatattcctcaaagctagtattaacactctctg |
46222808 |
T |
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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 227089 - 227119
Alignment:
| Q |
170 |
ttccaatccaatccatcacataatccttcac |
200 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
227089 |
ttccaatccaatccatcacataatccttcac |
227119 |
T |
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