View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8559_low_9 (Length: 228)
Name: NF8559_low_9
Description: NF8559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8559_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 33675323 - 33675486
Alignment:
| Q |
20 |
agacgaaaatcaacaccttgtatatatgcttcaattttgaaatttgaggaaaaattgttccttcttcatttgaaggattaacctaaaatagtaaaattca |
119 |
Q |
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| T |
33675323 |
agacgaaaatcaacaccttgtatatatgcttcaattttgaaatttgaggaaaaattgttccttcttcatttgaaggattaacctaaaatagtaaaattca |
33675422 |
T |
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| Q |
120 |
atgtatctctgtacaccagatgaggtaaaagaacgtgggaaacgtttgcttgtaacaacaaaat |
183 |
Q |
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| T |
33675423 |
atgtatctctgtacaccagatgaggtaaaagaacgtgggaaacgtttgcttgtaacaacaaaat |
33675486 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 33737183 - 33737239
Alignment:
| Q |
52 |
aattttgaaatttgaggaaaaattgttccttcttcatttgaaggattaacctaaaat |
108 |
Q |
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| T |
33737183 |
aattatgaaatttggggaaaactagttccttcttcatttgaaggatcaaccgaaaat |
33737239 |
T |
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