View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_high_10 (Length: 373)
Name: NF8560_high_10
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 36104142 - 36103805
Alignment:
| Q |
23 |
agatccaacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatct |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104142 |
agatccaacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatct |
36104043 |
T |
|
| Q |
123 |
gggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104042 |
gggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggct |
36103943 |
T |
|
| Q |
223 |
cgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttaccatgtctccaaatgtatgctgatcaaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36103942 |
cgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttacaatgtctccaaatgtatgctgatcaaa |
36103843 |
T |
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| Q |
323 |
taaaactccctctcctttcaaatcatcccacaccctct |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36103842 |
taaaactccctctcctttcaaatcatcccacaccctct |
36103805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 36142163 - 36142134
Alignment:
| Q |
331 |
cctctcctttcaaatcatcccacaccctct |
360 |
Q |
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| T |
36142163 |
cctctcctttcaaatcatcccacaccctct |
36142134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 10857359 - 10857022
Alignment:
| Q |
23 |
agatccaacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatct |
122 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857359 |
agatccaacactgactcaataaatgtcacaattagattcatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatct |
10857260 |
T |
|
| Q |
123 |
gggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857259 |
gggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggct |
10857160 |
T |
|
| Q |
223 |
cgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttaccatgtctccaaatgtatgctgatcaaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10857159 |
cgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttacaatgtctccaaatgtatgctgatcaaa |
10857060 |
T |
|
| Q |
323 |
taaaactccctctcctttcaaatcatcccacaccctct |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
10857059 |
taaaactccctctcctttcaaatcatcccacaccctct |
10857022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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