View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_high_14 (Length: 331)

Name: NF8560_high_14
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_high_14
NF8560_high_14
[»] chr6 (7 HSPs)
chr6 (14-245)||(10578656-10578894)
chr6 (13-113)||(6424102-6424202)
chr6 (48-112)||(19633344-19633408)
chr6 (50-117)||(7993298-7993365)
chr6 (48-106)||(6602488-6602546)
chr6 (47-105)||(6433085-6433143)
chr6 (48-94)||(6437149-6437195)
[»] chr5 (2 HSPs)
chr5 (14-109)||(20477197-20477292)
chr5 (47-109)||(17205955-17206017)
[»] chr7 (3 HSPs)
chr7 (54-112)||(15091350-15091408)
chr7 (47-112)||(10168807-10168872)
chr7 (47-112)||(10176332-10176397)
[»] chr8 (1 HSPs)
chr8 (51-112)||(32152209-32152270)
[»] chr1 (2 HSPs)
chr1 (58-112)||(19467185-19467239)
chr1 (47-112)||(33161432-33161497)
[»] chr4 (5 HSPs)
chr4 (59-112)||(1524075-1524128)
chr4 (51-94)||(1547469-1547512)
chr4 (51-106)||(6007668-6007723)
chr4 (51-94)||(12126883-12126926)
chr4 (51-96)||(2367687-2367732)
[»] chr2 (1 HSPs)
chr2 (278-317)||(31267267-31267307)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 10578894 - 10578656
Alignment:
Q  14 tttgaggaaagggactcttgagggatagacctcgagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaaa 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578894 tttgaggaaagggactcttgagggatagacgtcgagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaaa 10578795  T
Q  114 tagtaaccaccgttttccttaaccaagaatttcaaaatatattcccaacagtcatcaggtaaattctcaaccattttcttccttttcatggtgagagct- 212  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      
T  10578794 tagtaaccaccgttttccttaacgaagtatttcaaaatatattcccaacagtcatcaggtaaattctcaaccattttctttcttttcatggtgagagcga 10578695  T
Q  213 ---ccgcaaatagaagaaga---tatgagaaagcgtttc 245  Q
       |||||||||||||||||   ||||||||||||||||    
T  10578694 gcgccgcaaatagaagaagaagatatgagaaagcgtttc 10578656  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 6424102 - 6424202
Alignment:
Q  13 gtttgaggaaagggactcttgagggatagacctcgagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    ||||||||||||||| | |||||   ||||||  ||||||||||||||||  |||||||| ||||||||| |||||||||||||| || |||||||||||    
T  6424102 gtttgaggaaagggagtgttgagctgtagaccgtgagtgagaataggagagagttggttacggagaggaactgtttggagacgagggaaagagaattcaa 6424201  T
Q  113 a 113  Q
    |    
T  6424202 a 6424202  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 19633344 - 19633408
Alignment:
Q  48 agtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    ||||||||||||||||  |||||||| |||||||| |||||||||||||| ||||||||||||||    
T  19633344 agtgagaataggagacaattggttattgagaggaactgtttggagacgagggatagagaattcaa 19633408  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 7993365 - 7993298
Alignment:
Q  50 tgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaaatagt 117  Q
    ||||||| |||||| | |||| ||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  7993365 tgagaatcggagacggctggtgatggagaggaactgtttggagacgagagataaagaattcaagtagt 7993298  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 6602546 - 6602488
Alignment:
Q  48 agtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagaga 106  Q
    |||||||||||||||| |||||| | ||||||||| |||||||||||||| ||||||||    
T  6602546 agtgagaataggagacagttggtgacggagaggaaatgtttggagacgagggatagaga 6602488  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 6433085 - 6433143
Alignment:
Q  47 gagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagag 105  Q
    ||||||||||||||||  |||||| | ||||||||| | |||||||||||| |||||||    
T  6433085 gagtgagaataggagatggttggtgacggagaggaactatttggagacgagggatagag 6433143  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 6437149 - 6437195
Alignment:
Q  48 agtgagaataggagactgttggttatggagaggaattgtttggagac 94  Q
    |||||||| ||||||| |||||| ||||||||||| |||||||||||    
T  6437149 agtgagaacaggagacggttggtgatggagaggaactgtttggagac 6437195  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 20477292 - 20477197
Alignment:
Q  14 tttgaggaaagggactcttgagggatagacctcgagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaatt 109  Q
    ||||| |||||||||| ||||||||| |||   ||||||||||||||||   || ||||| |||||||| |||||||||||| | |||||||||||    
T  20477292 tttgacgaaagggactgttgagggattgacagtgagtgagaataggagagaatttgttatagagaggaactgtttggagacgcgggatagagaatt 20477197  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 17205955 - 17206017
Alignment:
Q  47 gagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaatt 109  Q
    |||||||||| ||| ||||| ||| || ||||| || |||||||||||||| |||||||||||    
T  17205955 gagtgagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagagaatt 17206017  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 15091408 - 15091350
Alignment:
Q  54 aataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||    
T  15091408 aatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaa 15091350  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 10168872 - 10168807
Alignment:
Q  47 gagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    |||||| ||| | ||| ||||||| ||||||||||| ||||||||||| || ||||||||||||||    
T  10168872 gagtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaa 10168807  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 10176397 - 10176332
Alignment:
Q  47 gagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    |||||| ||| | ||| ||||||| ||||||||||| ||||||||||| || ||||||||||||||    
T  10176397 gagtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaa 10176332  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 32152209 - 32152270
Alignment:
Q  51 gagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||| || || ||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaa 32152270  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 19467239 - 19467185
Alignment:
Q  58 ggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    |||||| ||||||||| |||||||||||||||||||| || || |||||||||||    
T  19467239 ggagacggttggttattgagaggaattgtttggagacaagggaaagagaattcaa 19467185  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 33161432 - 33161497
Alignment:
Q  47 gagtgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    |||||||||| | ||||| || || |||||||| || |||||||||||||| ||||||||||||||    
T  33161432 gagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaa 33161497  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 1524128 - 1524075
Alignment:
Q  59 gagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 112  Q
    |||||||||||| ||||||||||||||||| ||||| | ||| |||||||||||    
T  1524128 gagactgttggtaatggagaggaattgtttagagaccaaagagagagaattcaa 1524075  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 1547512 - 1547469
Alignment:
Q  51 gagaataggagactgttggttatggagaggaattgtttggagac 94  Q
    |||||| |||||| |||||| |||||||||||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 6007668 - 6007723
Alignment:
Q  51 gagaataggagactgttggttatggagaggaattgtttggagacgagagatagaga 106  Q
    |||||| ||||||||||||| ||||||||||| ||||| |||||||| || |||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagaga 6007723  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 12126883 - 12126926
Alignment:
Q  51 gagaataggagactgttggttatggagaggaattgtttggagac 94  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||    
T  12126883 gagaataggagacggttggtgatggagagaaattgtttggagac 12126926  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 2367732 - 2367687
Alignment:
Q  51 gagaataggagactgttggttatggagaggaattgtttggagacga 96  Q
    |||||| |||||| |||||| |||||||| ||||||||||||||||    
T  2367732 gagaatcggagacggttggtgatggagagaaattgtttggagacga 2367687  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 31267267 - 31267307
Alignment:
Q  278 ctacgtgggttcgt-ggattgtctgtggtagtggttgttta 317  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  31267267 ctacgttggttcgttggattgtctgtggtagtggttgttta 31267307  T

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