View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_high_16 (Length: 320)

Name: NF8560_high_16
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_high_16
NF8560_high_16
[»] chr6 (26 HSPs)
chr6 (13-304)||(2140280-2140572)
chr6 (12-91)||(17168861-17168940)
chr6 (43-78)||(13211307-13211342)
chr6 (44-86)||(6299511-6299553)
chr6 (44-86)||(6306321-6306363)
chr6 (31-80)||(29711248-29711297)
chr6 (55-86)||(9024194-9024225)
chr6 (50-85)||(32299280-32299315)
chr6 (51-86)||(34446571-34446606)
chr6 (52-86)||(4859131-4859165)
chr6 (53-91)||(9617442-9617480)
chr6 (56-86)||(10157995-10158025)
chr6 (52-86)||(29049892-29049926)
chr6 (53-91)||(30866157-30866195)
chr6 (52-86)||(33076415-33076449)
chr6 (32-82)||(33141245-33141295)
chr6 (54-91)||(9629392-9629429)
chr6 (53-89)||(43724-43760)
chr6 (250-278)||(2125235-2125263)
chr6 (51-91)||(7569181-7569221)
chr6 (54-86)||(8148129-8148161)
chr6 (43-75)||(10760870-10760902)
chr6 (43-91)||(15443693-15443741)
chr6 (50-86)||(19602199-19602235)
chr6 (55-87)||(29670903-29670935)
chr6 (38-86)||(34625727-34625775)
[»] chr8 (29 HSPs)
chr8 (38-119)||(28745491-28745572)
chr8 (52-91)||(34201059-34201098)
chr8 (53-86)||(29198497-29198530)
chr8 (50-86)||(3508057-3508093)
chr8 (53-89)||(29447125-29447161)
chr8 (45-85)||(34739080-34739120)
chr8 (55-86)||(10441213-10441244)
chr8 (44-91)||(31236590-31236637)
chr8 (52-86)||(1639497-1639531)
chr8 (52-86)||(12985399-12985433)
chr8 (52-86)||(14227229-14227263)
chr8 (52-86)||(14740737-14740771)
chr8 (52-86)||(37225761-37225795)
chr8 (52-86)||(40063958-40063992)
chr8 (53-86)||(1591307-1591340)
chr8 (53-114)||(24362192-24362253)
chr8 (51-80)||(30068052-30068081)
chr8 (43-92)||(33697153-33697202)
chr8 (37-86)||(43551879-43551928)
chr8 (47-91)||(3025553-3025597)
chr8 (56-84)||(3520105-3520133)
chr8 (43-83)||(5307059-5307098)
chr8 (53-85)||(6211456-6211488)
chr8 (46-86)||(6960694-6960734)
chr8 (50-86)||(7616867-7616903)
chr8 (51-91)||(14692466-14692505)
chr8 (52-80)||(28883902-28883930)
chr8 (46-86)||(31586295-31586335)
chr8 (51-91)||(44067522-44067562)
[»] chr2 (17 HSPs)
chr2 (51-91)||(30563415-30563455)
chr2 (51-119)||(40681988-40682056)
chr2 (51-86)||(18570978-18571013)
chr2 (44-78)||(24011035-24011069)
chr2 (40-86)||(37497115-37497161)
chr2 (45-86)||(10250726-10250767)
chr2 (38-119)||(19613598-19613679)
chr2 (38-86)||(22131272-22131320)
chr2 (51-86)||(10535777-10535812)
chr2 (51-86)||(31026701-31026736)
chr2 (44-86)||(4332925-4332967)
chr2 (52-86)||(12933754-12933788)
chr2 (52-86)||(44605157-44605191)
chr2 (45-86)||(12748684-12748725)
chr2 (38-83)||(18622408-18622453)
chr2 (46-82)||(2073943-2073979)
chr2 (41-85)||(40170196-40170240)
[»] chr4 (29 HSPs)
chr4 (43-86)||(5654609-5654652)
chr4 (43-86)||(10546146-10546189)
chr4 (51-86)||(18513259-18513294)
chr4 (40-91)||(19230322-19230373)
chr4 (53-119)||(903930-903996)
chr4 (40-86)||(31243566-31243612)
chr4 (45-83)||(43188612-43188650)
chr4 (46-86)||(5176985-5177025)
chr4 (51-82)||(14465316-14465347)
chr4 (51-86)||(20743296-20743331)
chr4 (55-86)||(26276027-26276058)
chr4 (51-86)||(32910557-32910592)
chr4 (51-86)||(34589724-34589759)
chr4 (51-86)||(43299989-43300024)
chr4 (51-86)||(43300622-43300657)
chr4 (46-88)||(12163849-12163891)
chr4 (44-86)||(51673460-51673502)
chr4 (53-86)||(2976702-2976735)
chr4 (51-80)||(7012072-7012101)
chr4 (53-86)||(8457933-8457966)
chr4 (53-86)||(12077836-12077869)
chr4 (40-86)||(12310808-12310856)
chr4 (38-91)||(22440613-22440666)
chr4 (53-86)||(24613719-24613752)
chr4 (52-81)||(48845148-48845177)
chr4 (54-86)||(11110212-11110244)
chr4 (51-91)||(24343513-24343553)
chr4 (45-77)||(41297391-41297423)
chr4 (54-86)||(44796980-44797012)
[»] chr3 (25 HSPs)
chr3 (55-113)||(35222498-35222556)
chr3 (44-86)||(52369774-52369816)
chr3 (38-83)||(9210846-9210891)
chr3 (50-86)||(20691324-20691360)
chr3 (51-86)||(12704675-12704710)
chr3 (51-86)||(16789668-16789703)
chr3 (51-86)||(21149073-21149108)
chr3 (51-86)||(40150589-40150624)
chr3 (44-86)||(5339107-5339149)
chr3 (53-91)||(9624649-9624687)
chr3 (46-84)||(19730229-19730267)
chr3 (46-84)||(19750819-19750857)
chr3 (40-86)||(32166201-32166247)
chr3 (40-86)||(34189422-34189468)
chr3 (52-86)||(40017387-40017421)
chr3 (52-86)||(41319328-41319362)
chr3 (53-122)||(8039817-8039886)
chr3 (45-86)||(11251978-11252019)
chr3 (53-86)||(21110481-21110514)
chr3 (29-86)||(24399661-24399718)
chr3 (50-86)||(11093575-11093611)
chr3 (51-91)||(24205054-24205094)
chr3 (50-86)||(27858345-27858381)
chr3 (53-89)||(31207847-31207883)
chr3 (51-87)||(40697875-40697911)
[»] chr7 (19 HSPs)
chr7 (49-86)||(44172908-44172945)
chr7 (38-86)||(28943432-28943480)
chr7 (51-86)||(38134424-38134459)
chr7 (50-86)||(21247754-21247790)
chr7 (40-86)||(36013816-36013863)
chr7 (45-88)||(41360910-41360953)
chr7 (32-82)||(2525866-2525916)
chr7 (54-108)||(19930937-19930991)
chr7 (40-86)||(23930214-23930260)
chr7 (49-87)||(30606081-30606119)
chr7 (44-86)||(30813811-30813853)
chr7 (52-86)||(36314645-36314679)
chr7 (50-91)||(12278840-12278881)
chr7 (45-86)||(17780102-17780143)
chr7 (51-91)||(10230086-10230126)
chr7 (51-91)||(18233611-18233651)
chr7 (54-86)||(30516375-30516407)
chr7 (51-91)||(43249999-43250039)
chr7 (51-87)||(44020981-44021017)
[»] chr1 (21 HSPs)
chr1 (34-91)||(40747786-40747843)
chr1 (51-86)||(11571591-11571626)
chr1 (52-86)||(3921674-3921708)
chr1 (55-119)||(25361896-25361960)
chr1 (51-87)||(42325566-42325602)
chr1 (43-86)||(7988469-7988512)
chr1 (53-91)||(6427358-6427396)
chr1 (40-86)||(19637763-19637809)
chr1 (53-91)||(41017417-41017455)
chr1 (53-86)||(2471231-2471264)
chr1 (51-84)||(11412788-11412821)
chr1 (57-86)||(14332420-14332449)
chr1 (53-86)||(29230073-29230106)
chr1 (53-86)||(30847738-30847771)
chr1 (49-86)||(43609836-43609873)
chr1 (50-86)||(498415-498450)
chr1 (51-91)||(17425106-17425146)
chr1 (51-119)||(24176352-24176420)
chr1 (53-97)||(34298444-34298488)
chr1 (55-119)||(44482240-44482304)
chr1 (63-107)||(50233419-50233463)
[»] chr5 (22 HSPs)
chr5 (38-86)||(18607115-18607163)
chr5 (51-86)||(11596473-11596508)
chr5 (52-90)||(9449476-9449514)
chr5 (51-85)||(28296334-28296368)
chr5 (53-119)||(30098334-30098400)
chr5 (45-85)||(16864018-16864058)
chr5 (45-85)||(32428945-32428985)
chr5 (51-91)||(38749576-38749616)
chr5 (43-86)||(30080519-30080562)
chr5 (51-86)||(43208292-43208327)
chr5 (52-86)||(41558701-41558735)
chr5 (53-86)||(2039867-2039900)
chr5 (53-114)||(22423802-22423863)
chr5 (53-86)||(31264446-31264479)
chr5 (52-85)||(39424648-39424681)
chr5 (57-86)||(41558672-41558701)
chr5 (50-86)||(14818321-14818356)
chr5 (14-86)||(19438312-19438384)
chr5 (51-83)||(19737503-19737535)
chr5 (43-91)||(25863202-25863250)
chr5 (51-91)||(32630748-32630788)
chr5 (46-82)||(41600899-41600935)
[»] scaffold0571 (1 HSPs)
scaffold0571 (50-83)||(7695-7728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (51-108)||(151396-151453)
[»] scaffold0037 (2 HSPs)
scaffold0037 (46-86)||(102906-102946)
scaffold0037 (40-86)||(32601-32647)
[»] scaffold0007 (1 HSPs)
scaffold0007 (51-91)||(225281-225321)
[»] scaffold0598 (1 HSPs)
scaffold0598 (51-86)||(8071-8106)
[»] scaffold0022 (1 HSPs)
scaffold0022 (51-91)||(99899-99939)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 2140572 - 2140280
Alignment:
Q  13 gacacggacaccaaatacaacacacatacatcgacattgataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2140572 gacacggacaccaaatacaacacaaatacatcgacattgataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgttggtg 2140473  T
Q  113 tcggacatgatagtgttacatacccaacactaggactctcataatccgatgagtgtctgtgtttcatagcatctcactggcataatgaaag-nnnnnnnn 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||             
T  2140472 tcggacatgatagtgttacatacccaacactaggactctcataatccgaagagtgtttctgtttcatagcatctcactggcataatgaaagaaaaaaaaa 2140373  T
Q  212 nttgaaaaggtaaaatatttttagttcttaaaacttaattacccttccatgatttgactattggagttggcttggtctttgaagatggtggtg 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2140372 attgaaaaggtaaaatatttttagttcttaaaacttaattacccttccatgatttgactattggagttggcttggtctttgaagttggtggtg 2140280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 17168861 - 17168940
Alignment:
Q  12 agacacggacaccaaatacaacacacatacatcgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||| || || ||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17168861 agacacggacaccgaacacgacacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgtaactata 17168940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 13211342 - 13211307
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataatt 78  Q
    ||||||||||||||||||||||||||||||||||||    
T  13211342 tcgacattgataataatttgagaaaatgacataatt 13211307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 6299511 - 6299553
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  6299511 cgacatggataataatttgagaaaatgatataattcaatgtaa 6299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 6306321 - 6306363
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  6306321 cgacatggataataatttgagaaaatgatataattcaatgtaa 6306363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 29711248 - 29711297
Alignment:
Q  31 aacacacatacatcgacattgataataatttgagaaaatgacataattca 80  Q
    ||||| ||| |||| |||| ||||||||||||||||||||||||||||||    
T  29711248 aacactcatgcatcaacatcgataataatttgagaaaatgacataattca 29711297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 9024225 - 9024194
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaa 9024194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 32299280 - 32299315
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgta 85  Q
    |||||||||||||||||||| |||||||||||||||    
T  32299280 tgataataatttgagaaaatcacataattcaatgta 32299315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 34446571 - 34446606
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  34446571 gataataatttgagaaaatgacataattcagtgtaa 34446606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 4859165 - 4859131
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| ||||||||    
T  4859165 ataataatttgagaaaatgacataatccaatgtaa 4859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 9617442 - 9617480
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattata 9617480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 10157995 - 10158025
Alignment:
Q  56 taatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaa 10158025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 29049892 - 29049926
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||||    
T  29049892 ataataatttgagaaaattacataattcaatgtaa 29049926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 30866195 - 30866157
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattata 30866157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 33076415 - 33076449
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||| |||||||    
T  33076415 ataataatttgagaaaatgacataattgaatgtaa 33076449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 33141245 - 33141295
Alignment:
Q  32 acacacatacatcgacattgataataatttgagaaaatgacataattcaat 82  Q
    ||||| |||| |||||| | |||||||||||||||||| ||||||||||||    
T  33141245 acacatatacgtcgacaataataataatttgagaaaataacataattcaat 33141295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 9629392 - 9629429
Alignment:
Q  54 aataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattata 9629429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 43724 - 43760
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaacta 89  Q
    ||||||||||||||||| || ||||||||||||||||    
T  43724 taataatttgagaaaatcacgtaattcaatgtaacta 43760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 2125263 - 2125235
Alignment:
Q  250 ttacccttccatgatttgactattggagt 278  Q
    |||||||||||||||||||||||||||||    
T  2125263 ttacccttccatgatttgactattggagt 2125235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 7569221 - 7569181
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||| |||||||||| ||||| ||||    
T  7569221 gataataatttgagaaaattacataattcagtgtaattata 7569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 8148129 - 8148161
Alignment:
Q  54 aataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||| |||||||    
T  8148129 aataatttgagaaaatgacataattgaatgtaa 8148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 10760902 - 10760870
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacata 75  Q
    |||||| ||||||||||||||||||||||||||    
T  10760902 tcgacactgataataatttgagaaaatgacata 10760870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 15443693 - 15443741
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||  |||||||||||||||||| |||||||||||| ||| ||||    
T  15443693 tcgacatcaataataatttgagaaaataacataattcaatataattata 15443741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 19602235 - 19602199
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||| |||||||| |||||    
T  19602235 tgataataatttgagaaaatgatataattcagtgtaa 19602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 29670903 - 29670935
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaac 87  Q
    |||||||||||||||||||| ||||||||||||    
T  29670903 ataatttgagaaaatgacatgattcaatgtaac 29670935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 34625727 - 34625775
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||  |||||||||||||||||||||  ||||| |||||||    
T  34625727 atacatcgacaccgataataatttgagaaaatgaattaattgaatgtaa 34625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 28745491 - 28745572
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    ||||||||||| || ||||||||||| ||| | ||||||||||||||||||| | || || || ||||||||||||||||||    
T  28745491 atacatcgacactgctaataatttgaaaaattcacataattcaatgtaactacaaatgtcgatgtcgtgtcggtgtcggaca 28745572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 34201098 - 34201059
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaattata 34201059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 29198530 - 29198497
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaa 29198497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 3508057 - 3508093
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||| ||||||||||||||||    
T  3508057 tgataataatttgagaaaataacataattcaatgtaa 3508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 29447161 - 29447125
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaacta 89  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29447161 taataatttgagaaaatcacataattcaatgtaacta 29447125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 34739120 - 34739080
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgta 85  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  34739120 gacatcgataataatatgagaaaatgacataattcaatgta 34739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 10441213 - 10441244
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||    
T  10441213 ataatttgagaaaatgacataattcaatgtaa 10441244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 31236637 - 31236590
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||| || ||||||||||||||||| |||||||||||||||| ||||    
T  31236637 cgacactgctaataatttgagaaaatcacataattcaatgtaattata 31236590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 1639497 - 1639531
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| ||||||||||||||||||||||||||||    
T  1639497 ataatattttgagaaaatgacataattcaatgtaa 1639531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 12985399 - 12985433
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaa 12985433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 14227229 - 14227263
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||||    
T  14227229 ataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 14740737 - 14740771
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||| ||||||||||||||||||||||||||    
T  14740737 ataataatgtgagaaaatgacataattcaatgtaa 14740771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 37225795 - 37225761
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||||    
T  37225795 ataataatttgagaaaataacataattcaatgtaa 37225761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 40063958 - 40063992
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||| |||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaa 40063992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 1591307 - 1591340
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||||||||||||||||||||    
T  1591307 taatattttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 24362253 - 24362192
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtc 114  Q
    ||||||||||||| ||| |||||||||| ||||| ||||  | ||||| |||||||||||||    
T  24362253 taataatttgagagaatcacataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 30068081 - 30068052
Alignment:
Q  51 gataataatttgagaaaatgacataattca 80  Q
    ||||||||||||||||||||||||||||||    
T  30068081 gataataatttgagaaaatgacataattca 30068052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 33697202 - 33697153
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaactatac 92  Q
    ||||||||||||||||||||||||||| | |||||| ||| |||| ||||    
T  33697202 tcgacattgataataatttgagaaaataaaataattgaatataaccatac 33697153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 43551928 - 43551879
Alignment:
Q  37 catacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| | ||||||||||||||||  ||||||||||||||||| |||||    
T  43551928 catacaccaacattgataataatttacgaaaatgacataattcattgtaa 43551879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 3025553 - 3025597
Alignment:
Q  47 cattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||| ||||||||||||||||| |||||||||| ||||| ||||    
T  3025553 cattgctaataatttgagaaaatcacataattcagtgtaattata 3025597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 3520133 - 3520105
Alignment:
Q  56 taatttgagaaaatgacataattcaatgt 84  Q
    |||||||||||||||||||||||||||||    
T  3520133 taatttgagaaaatgacataattcaatgt 3520105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 5307059 - 5307098
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatg 83  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  5307059 tcgacactgataataatttga-aaaatgacataattcaatg 5307098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 6211488 - 6211456
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgta 85  Q
    ||||||||||| |||||||||||||||||||||    
T  6211488 taataatttgaaaaaatgacataattcaatgta 6211456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 6960734 - 6960694
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||| | |||||||||||||||||||| |||||||    
T  6960734 acattgataaaattttgagaaaatgacataatttaatgtaa 6960694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 7616903 - 7616867
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  7616903 tgatgataatttgagaaaatgacacaattcaatgtaa 7616867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 14692466 - 14692505
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  14692466 gataataatttgagaaa-tgacataattcagtgtaactata 14692505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 28883930 - 28883902
Alignment:
Q  52 ataataatttgagaaaatgacataattca 80  Q
    |||||||||||||||||||||||||||||    
T  28883930 ataataatttgagaaaatgacataattca 28883902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 31586335 - 31586295
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| |||||  |||||||    
T  31586335 acattgataataatttgagaaaatgatataatataatgtaa 31586295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 44067522 - 44067562
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||||||||||| || ||||| ||||    
T  44067522 gataataatttgagaaaatgacataatacagtgtaattata 44067562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 30563415 - 30563455
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30563415 gataataatttgagaaaatgacataattcaatgtaactata 30563455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 40681988 - 40682056
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    |||||||||||||||||||||||||||||||||||| |  || | ||||| |||||| ||||| |||||    
T  40681988 gataataatttgagaaaatgacataattcaatgtaattgcacgtgtcaatgtcgtgttggtgttggaca 40682056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 18570978 - 18571013
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaa 18571013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 24011035 - 24011069
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataatt 78  Q
    |||||||||||||||||||||||||||||||||||    
T  24011035 cgacattgataataatttgagaaaatgacataatt 24011069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 37497115 - 37497161
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||    
T  37497115 acatcgacactgataataatttgagaaaatgccacaattcaatgtaa 37497161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 10250726 - 10250767
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  10250726 gacattgataataatttgagaaaataacacaattcaatgtaa 10250767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 19613679 - 19613598
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    |||| |||||| | |||||||||||||||||| ||||||||||||||||  |||  | | | ||||| ||||||||||||||    
T  19613679 atacgtcgacactcataataatttgagaaaataacataattcaatgtaatgatatgtgttagtatcgcgtcggtgtcggaca 19613598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 22131320 - 22131272
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||| ||||| |||||||||||||||||||  ||||||||||    
T  22131320 atacatcgacactgatagtaatttgagaaaatgacattgttcaatgtaa 22131272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 10535812 - 10535777
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  10535812 gataataatttgagaaaatgacataattcagtgtaa 10535777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 31026701 - 31026736
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31026701 gataataatttaagaaaatgacataattcaatgtaa 31026736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 4332925 - 4332967
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||    
T  4332925 cgacactgataataatttgggaaaatcacataattcaatgtaa 4332967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 12933788 - 12933754
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||| ||||||||||||||||||||||||    
T  12933788 ataataatttaagaaaatgacataattcaatgtaa 12933754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 44605191 - 44605157
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaa 44605157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 12748684 - 12748725
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  12748684 gacatggataataatttgagaaaatgacatagttcagtgtaa 12748725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 18622408 - 18622453
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatg 83  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  18622408 atacaccgacatcgataataatttaagaaaatgacataattaaatg 18622453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 2073943 - 2073979
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaat 82  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2073943 acatcgataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 40170240 - 40170196
Alignment:
Q  41 catcgacattgataataatttgagaaaatgacataattcaatgta 85  Q
    ||||||||||| |||||||||| |||||||| |||||| ||||||    
T  40170240 catcgacattggtaataatttgtgaaaatgatataattgaatgta 40170196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 5654652 - 5654609
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  5654652 tcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 10546146 - 10546189
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  10546146 tcgacaatgataataatttgagaaaatgacataattcaatgtaa 10546189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 18513294 - 18513259
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  18513294 gataataatttgagaaaatgacataattcaatgtaa 18513259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 19230373 - 19230322
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  19230373 acatggacatagataataatttgagaaaataacataattcaatgtaattata 19230322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 903930 - 903996
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    ||||||||||||||||| |||||||||| ||||| ||||  ||||| |||||| ||||||| |||||    
T  903930 taataatttgagaaaatcacataattcagtgtaattatatgtatcagtatcgtatcggtgttggaca 903996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 31243612 - 31243566
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||    
T  31243612 acatcgacacttataataatttgagaaaatgacataattcagtgtaa 31243566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 43188612 - 43188650
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatg 83  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  43188612 gacactgataataatttgagaaaatgacataattcaatg 43188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 5176985 - 5177025
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  5176985 acattgataatattttgagaaaataacataattcaatgtaa 5177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 82
Target Start/End: Complemental strand, 14465347 - 14465316
Alignment:
Q  51 gataataatttgagaaaatgacataattcaat 82  Q
    ||||||||||||||||||||||||||||||||    
T  14465347 gataataatttgagaaaatgacataattcaat 14465316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 20743331 - 20743296
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  20743331 gataataatttgagaaaatgacataattcagtgtaa 20743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 26276058 - 26276027
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||    
T  26276058 ataatttgagaaaatgacataattcaatgtaa 26276027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 32910557 - 32910592
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  32910557 gataataatttgagaaaatgacataattcagtgtaa 32910592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 34589759 - 34589724
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34589759 gataacaatttgagaaaatgacataattcaatgtaa 34589724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 43300024 - 43299989
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43300024 gataataatttgagaaaattacataattcaatgtaa 43299989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 43300622 - 43300657
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43300622 gataataatttgagaaaattacataattcaatgtaa 43300657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 12163849 - 12163891
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgtaact 88  Q
    |||||| |||||||||| ||||||||||||||| |||||||||    
T  12163849 acattgttaataatttgtgaaaatgacataattgaatgtaact 12163891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 51673502 - 51673460
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||    
T  51673502 cgacactgataataattggagaaaatgacataattcattgtaa 51673460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 2976702 - 2976735
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| |||||||    
T  2976702 taataatttgagaaaatgacataattgaatgtaa 2976735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 7012072 - 7012101
Alignment:
Q  51 gataataatttgagaaaatgacataattca 80  Q
    ||||||||||||||||||||||||||||||    
T  7012072 gataataatttgagaaaatgacataattca 7012101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 8457933 - 8457966
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| |||||||    
T  8457933 taataatttgagaaaatgacataattgaatgtaa 8457966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 12077836 - 12077869
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||| ||||||||||||||||    
T  12077836 taataatttgagaaaatcacataattcaatgtaa 12077869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 12310808 - 12310856
Alignment:
Q  40 acatcgacattgataataatttgag--aaaatgacataattcaatgtaa 86  Q
    |||||||||| ||||||||||||||  |||||| |||||||||||||||    
T  12310808 acatcgacatcgataataatttgagaaaaaatggcataattcaatgtaa 12310856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 22440666 - 22440613
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||||||  | ||||||||||||||||| |||||||||| ||||| ||||    
T  22440666 atacatcgacaccgttaataatttgagaaaatcacataattcagtgtaattata 22440613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 24613752 - 24613719
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||| ||||||||||||||||    
T  24613752 taataatttgagaaaatcacataattcaatgtaa 24613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 48845148 - 48845177
Alignment:
Q  52 ataataatttgagaaaatgacataattcaa 81  Q
    ||||||||||||||||||||||||||||||    
T  48845148 ataataatttgagaaaatgacataattcaa 48845177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 11110212 - 11110244
Alignment:
Q  54 aataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| ||||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaa 11110244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 24343513 - 24343553
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||| |||||||||| ||||| ||||    
T  24343513 gataataatttgagaaaattacataattcagtgtaattata 24343553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 41297391 - 41297423
Alignment:
Q  45 gacattgataataatttgagaaaatgacataat 77  Q
    |||| ||||||||||||||||||||||||||||    
T  41297391 gacactgataataatttgagaaaatgacataat 41297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 44797012 - 44796980
Alignment:
Q  54 aataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||| ||||||||||||||||    
T  44797012 aataatttgagaaaataacataattcaatgtaa 44796980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 35222498 - 35222556
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgt 113  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||  ||||||||||||||    
T  35222498 ataatttgaaaaaatcacataattcaatctaactatacatatcgctatcgtgtcggtgt 35222556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 52369774 - 52369816
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  52369774 cgacatggataataatttgagaaaattacataattcaatgtaa 52369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 9210891 - 9210846
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatg 83  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||    
T  9210891 atacatagacaacgataataatttgagaaaatgacataattcaatg 9210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 20691324 - 20691360
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||| |||||    
T  20691324 tgataataatttgagaaaatgacataattcagtgtaa 20691360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 12704710 - 12704675
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12704710 gataataatttgaaaaaatgacataattcaatgtaa 12704675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 16789703 - 16789668
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  16789703 gataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 21149073 - 21149108
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaa 21149108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 40150624 - 40150589
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaa 40150589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 5339107 - 5339149
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||| ||||||||||||||||| |||||||| |||||||    
T  5339107 cgacattgttaataatttgagaaaatcacataatttaatgtaa 5339149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 9624649 - 9624687
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  9624649 taataatttgagaaaatcacataattcaatgtaattata 9624687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 19730267 - 19730229
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgt 84  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  19730267 acattgttaataatttgagaaaatgacataattgaatgt 19730229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 19750857 - 19750819
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgt 84  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  19750857 acattgttaataatttgagaaaatgacataattgaatgt 19750819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 32166247 - 32166201
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||| |||| || |||||||||||||||||||||||||| |||||||    
T  32166247 acattgacactggtaataatttgagaaaatgacataattgaatgtaa 32166201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 34189422 - 34189468
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||  ||||||||||||||||||||||||| |||| |||||    
T  34189422 acatcgacacagataataatttgagaaaatgacatatttcagtgtaa 34189468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 40017421 - 40017387
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  40017421 ataacaatttgagaaaatgacataattcaatgtaa 40017387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 41319362 - 41319328
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||| ||||||||||||||||||||||    
T  41319362 ataataatttgaaaaaatgacataattcaatgtaa 41319328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 8039886 - 8039817
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggacatga 122  Q
    ||||||||||||||||| | |||||||| ||||| ||||  | ||  | |||||||||||||||||||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatga 8039817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 11251978 - 11252019
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||| ||||||||||||||||| |||||||||| |||||    
T  11251978 gacattgctaataatttgagaaaatcacataattcagtgtaa 11252019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 21110514 - 21110481
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| |||||||    
T  21110514 taataatttgagaaaatgacataattgaatgtaa 21110481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 24399718 - 24399661
Alignment:
Q  29 acaacacacatacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||| ||||||||||  ||||||   ||||||| ||||||||||||||||||||    
T  24399718 acaacacaaatacatcgacgctgataaatttttgagacaatgacataattcaatgtaa 24399661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 11093575 - 11093611
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  11093575 tgataataatttgaaaaaatgacataattcaaagtaa 11093611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 24205094 - 24205054
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||||||||||| || ||||| ||||    
T  24205094 gataataatttgagaaaatgacataatacagtgtaattata 24205054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 27858345 - 27858381
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27858345 tgataataatttgagaaaatgacctaattgaatgtaa 27858381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 31207847 - 31207883
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaacta 89  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  31207847 taattatttgagaaaatgacataattgaatgtaacta 31207883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 40697911 - 40697875
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaac 87  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  40697911 gataataatatgagaaaatgacataattcaatctaac 40697875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 44172945 - 44172908
Alignment:
Q  49 ttgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44172945 ttgataataatttgagaaaatgacataattcaatgtaa 44172908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 28943480 - 28943432
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  28943480 atacaccgacattgataataatttgataaaatgacataactcaatgtaa 28943432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 38134459 - 38134424
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  38134459 gataataatttgagaaaatgacataattcaatgtaa 38134424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 21247790 - 21247754
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||| |||||||||||||    
T  21247790 tgataataatttgagaaaatgacgtaattcaatgtaa 21247754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 36013863 - 36013816
Alignment:
Q  40 acatcgacattgataataatttgagaaaa-tgacataattcaatgtaa 86  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  36013863 acattgacaatgataataatttgagaaaaatgacataattcaatgtaa 36013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 41360910 - 41360953
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgtaact 88  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||    
T  41360910 gacactgatattaatttgagaaaataacataattcaatgtaact 41360953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2525916 - 2525866
Alignment:
Q  32 acacacatacatcgacattgataataatttgagaaaatgacataattcaat 82  Q
    ||||| || ||||||||  |||||||||||||| |||||||||||||||||    
T  2525916 acacaaatgcatcgacaccgataataatttgagcaaatgacataattcaat 2525866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 19930991 - 19930937
Alignment:
Q  54 aataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtc 108  Q
    |||||||||| |||||||||||||||||||||| ||||  | || ||||||||||    
T  19930991 aataatttgataaaatgacataattcaatgtaattatatgtgtcgatatcgtgtc 19930937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 23930214 - 23930260
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||  |||| ||||||||||||||||||||||||| |||||    
T  23930214 acatcgacacggatagtaatttgagaaaatgacataattcagtgtaa 23930260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 30606119 - 30606081
Alignment:
Q  49 ttgataataatttgagaaaatgacataattcaatgtaac 87  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  30606119 ttgataataatttcaaaaaatgacataattcaatgtaac 30606081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 30813811 - 30813853
Alignment:
Q  44 cgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||| ||||||||||||||||| |||||||||| |||||    
T  30813811 cgacattgctaataatttgagaaaattacataattcagtgtaa 30813853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 36314679 - 36314645
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||| ||||||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaa 36314645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 12278840 - 12278881
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||||||| |||||||||||||||||| ||||| ||||    
T  12278840 tgataataatttaagaaaatgacataattcagtgtaattata 12278881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 17780143 - 17780102
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||    
T  17780143 gacatggataataatttaagaaaatgacataattctatgtaa 17780102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 10230126 - 10230086
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||||||||| ||||||||||||||| ||||| ||||    
T  10230126 gataataatttgaggaaatgacataattcagtgtaagtata 10230086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 18233651 - 18233611
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  18233651 gatagtaatttgagaaaatgacataattcagtgtaattata 18233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 30516407 - 30516375
Alignment:
Q  54 aataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaa 30516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 43249999 - 43250039
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||||||||||| || ||||| ||||    
T  43249999 gataataatttgagaaaatgacataatacagtgtaattata 43250039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 44020981 - 44021017
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaac 87  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  44020981 gataataatttgaaaaaattacataattcaatgtaac 44021017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 40747843 - 40747786
Alignment:
Q  34 acacatacatcgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||| ||| |||||  |||||||||||||||||||||||||||||||||||| ||||    
T  40747843 acacagacaccgacacggataataatttgagaaaatgacataattcaatgtaattata 40747786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 11571591 - 11571626
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaa 11571626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 3921674 - 3921708
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||||||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaa 3921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 25361896 - 25361960
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    ||||||||||||||| |||||||||| ||||| ||||  | ||| | ||||||||||||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggaca 25361960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 42325566 - 42325602
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaac 87  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42325566 gataataatttgagaaaatgacataattcagtgtaac 42325602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 7988512 - 7988469
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||    
T  7988512 tcgacactgataataatttaagaaagtgacataattcaatgtaa 7988469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 6427358 - 6427396
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  6427358 taataatttgagaaaatcacataattcaatgtaattata 6427396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 19637763 - 19637809
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||  ||||||||||| |||||||||||| |||||||||||    
T  19637763 acatcgacaccgataataatttaagaaaatgacattattcaatgtaa 19637809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 41017455 - 41017417
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  41017455 taataatttgagaaaatgacataatttaatgtaattata 41017417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 2471264 - 2471231
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||| ||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaa 2471231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 11412821 - 11412788
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgt 84  Q
    ||||||||| ||||||||||||||||||||||||    
T  11412821 gataataatatgagaaaatgacataattcaatgt 11412788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 14332420 - 14332449
Alignment:
Q  57 aatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||    
T  14332420 aatttgagaaaatgacataattcaatgtaa 14332449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 29230073 - 29230106
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||| |||||||    
T  29230073 taataatttgagaaaatgacataattgaatgtaa 29230106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 30847771 - 30847738
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||| ||||||||||||||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaa 30847738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 43609873 - 43609836
Alignment:
Q  49 ttgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  43609873 ttgataataatttgagaaaataacataattgaatgtaa 43609836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 498450 - 498415
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||| ||||||||||||||||||||||    
T  498450 tgataataatttga-aaaatgacataattcaatgtaa 498415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 17425146 - 17425106
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||| ||||| |||||||||||||||| ||||    
T  17425146 gataataatttgataaaatcacataattcaatgtaattata 17425106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 24176420 - 24176352
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    ||||||||||||||||||| |||| ||||| ||||| ||||  | || | ||| |||||||||||||||    
T  24176420 gataataatttgagaaaataacatcattcagtgtaattataggtgtcgagatcatgtcggtgtcggaca 24176352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 34298444 - 34298488
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactatacatatc 97  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  34298444 taataatttgagaaaatcacataattcagtgtaattatacgtatc 34298488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 44482240 - 44482304
Alignment:
Q  55 ataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    ||||||||||||||| |||||||||| ||||| ||||  | ||  | ||||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 44482304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 50233419 - 50233463
Alignment:
Q  63 agaaaatgacataattcaatgtaactatacatatcaatatcgtgt 107  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||||    
T  50233419 agaaaatgacataattcaatgtaatcataaatatcagtatcgtgt 50233463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18607163 - 18607115
Alignment:
Q  38 atacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  18607163 atacaccgacatggataataatttgagaaaataacataattcaatgtaa 18607115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 11596508 - 11596473
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  11596508 gataataatttgagaaaatgacataattcaatgtaa 11596473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 9449476 - 9449514
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaactat 90  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9449476 ataataatttgagaaaatcacataattcaatgtaactat 9449514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 28296334 - 28296368
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgta 85  Q
    |||||||||||||||||||||||||||||||||||    
T  28296334 gataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 30098334 - 30098400
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca 119  Q
    ||||||||||||||||| |||||||||||||||| |||| || ||  ||||| ||| ||||||||||    
T  30098334 taataatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggaca 30098400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 16864018 - 16864058
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgta 85  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  16864018 gacattgataataatgcgagaaaatgacataattcaatgta 16864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 32428985 - 32428945
Alignment:
Q  45 gacattgataataatttgagaaaatgacataattcaatgta 85  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  32428985 gacactgataataatttgagaaagtgacataattcaatgta 32428945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 38749616 - 38749576
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  38749616 gataataatttgaaaaaatgacataattcaatgtaattata 38749576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 30080562 - 30080519
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||| |||||| | ||||||||||||||||||||||||||||    
T  30080562 tcgacactgataaaattttgagaaaatgacataattcaatgtaa 30080519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 43208327 - 43208292
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||| |||||||||||||||||||||||||||||||    
T  43208327 gatagtaatttgagaaaatgacataattcaatgtaa 43208292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 41558735 - 41558701
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| ||||    
T  41558735 ataataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 2039900 - 2039867
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||| |||||||||||    
T  2039900 taataatttgagaaaatgacatgattcaatgtaa 2039867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 22423863 - 22423802
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtc 114  Q
    ||||||||||||||||| |||||||||||| ||| |||| || ||  | |||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 31264446 - 31264479
Alignment:
Q  53 taataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||| |||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaa 31264479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 39424648 - 39424681
Alignment:
Q  52 ataataatttgagaaaatgacataattcaatgta 85  Q
    ||||||||||||||||||||||| ||||||||||    
T  39424648 ataataatttgagaaaatgacatgattcaatgta 39424681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 41558701 - 41558672
Alignment:
Q  57 aatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||||||||||||||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaa 41558672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 14818356 - 14818321
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14818356 tgataataatttgagaaa-tgacataattcaatgtaa 14818321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 19438312 - 19438384
Alignment:
Q  14 acacggacaccaaatacaacacacatacatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||||| |||||| || ||||  | |||||||||| | | ||||||||||||||| |||||||||| |||||    
T  19438312 acacggataccaaacacgacactgacacatcgacatcgctgataatttgagaaaatcacataattcagtgtaa 19438384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 19737535 - 19737503
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatg 83  Q
    ||||||||||||||||||| |||||||||||||    
T  19737535 gataataatttgagaaaattacataattcaatg 19737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 25863202 - 25863250
Alignment:
Q  43 tcgacattgataataatttgagaaaatgacataattcaatgtaactata 91  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| ||||    
T  25863202 tcgacatgtataataatttgagaaaatgatataattcagtgtaattata 25863250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 32630788 - 32630748
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  32630788 gataataatttgagaaaattatataattcaatgtaattata 32630748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 41600899 - 41600935
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaat 82  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  41600899 acattgataataatttgagaaaattacacaattcaat 41600935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 7695 - 7728
Alignment:
Q  50 tgataataatttgagaaaatgacataattcaatg 83  Q
    ||||||||||||||||||||||||||||||||||    
T  7695 tgataataatttgagaaaatgacataattcaatg 7728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 151453 - 151396
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactatacatatcaatatcgtgtc 108  Q
    ||||||||||||||||||| | |||||| |||||||| ||||||||||| ||| ||||    
T  151453 gataataatttgagaaaataaaataattaaatgtaaccatacatatcaacatcatgtc 151396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 102906 - 102946
Alignment:
Q  46 acattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  102906 acatcgataataatttgagaaaatgatataattcaatgtaa 102946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 32647 - 32601
Alignment:
Q  40 acatcgacattgataataatttgagaaaatgacataattcaatgtaa 86  Q
    ||||| ||||||||||||||||||||||||||  ||||| |||||||    
T  32647 acatcaacattgataataatttgagaaaatgatgtaatttaatgtaa 32601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 225321 - 225281
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  225321 gataataatttgagaaaatgacataatacaatgtaattata 225281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 8106 - 8071
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaa 86  Q
    |||||||||||||||||||||||||||||| |||||    
T  8106 gataataatttgagaaaatgacataattcagtgtaa 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 99899 - 99939
Alignment:
Q  51 gataataatttgagaaaatgacataattcaatgtaactata 91  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  99899 gataataattttagaaaataacataattcaatgtaattata 99939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University