View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8560_high_19 (Length: 295)
Name: NF8560_high_19
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 29607207 - 29607467
Alignment:
| Q |
13 |
gataatactacaatgagttcagatgaaggaccgtcaccagcacccagtcccagtgcggtaatatccttttccattttactttaagttacaattctatatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29607207 |
gataatactacaatgagttcagatgaaggaccgtcaccagcacccagtcccagtgcggtaatatctttttccattttactttaagttacaattctatatt |
29607306 |
T |
|
| Q |
113 |
tacggacctctttggtctggattatgccgcattaacgaattcatgcaatctttgtcatctgatctttatcagacagattgtactctgacttggcaaaact |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29607307 |
tacggacctctttggtctggatcatgccgcattaacgaattcatgcaatctttgtcatctgatctttatcagacagattgtactctgacttggcaaaact |
29607406 |
T |
|
| Q |
213 |
tgctaaagcttcttttatcgaatcttatgattttatgtttcacagaatggtgcacaatctt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29607407 |
tgctaaagcttcttttatcgaatcttatgattttatgtttcacagaatggtgcacaatctt |
29607467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University