View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8560_high_22 (Length: 279)
Name: NF8560_high_22
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_22 |
 | |
|
| [»] chr6 (11 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 10578926 - 10579203
Alignment:
| Q |
1 |
ccattacgcttaactactgcgtcggcatttcttgtgacattgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatcgctcgttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10578926 |
ccattacgcttaactactgcgtcggcgtttcttgtgacgttgacaacatttttcgcttaatcactagtttcc-gttgaagaaactcacatcgctcgttct |
10579024 |
T |
|
| Q |
101 |
ctccggtgaacctaagttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
10579025 |
ctccggtgaacctaagttcccgtttgagaaactcaactcgctagctctctccggcgaaagcatctttcccacagatgggttacgagctttctcccaaaac |
10579124 |
T |
|
| Q |
201 |
ataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattgtttcc |
279 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10579125 |
ataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattgtttcc |
10579203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 33 - 279
Target Start/End: Original strand, 6596094 - 6596340
Alignment:
| Q |
33 |
tgtgacattgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaac |
132 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||| ||||| ||| |||||| |
|
|
| T |
6596094 |
tgtgacgtcgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatttctcgttttcaccggcgaacctagattcccatttaagaaac |
6596193 |
T |
|
| Q |
133 |
tcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctac |
232 |
Q |
| |
|
| || ||||| | |||||||||||||||||||||||| | || ||||||| || ||||||||||||||||||||||||||| | | | |||||||||| |
|
|
| T |
6596194 |
ttaaatcgctcgttctctccggcgaaagcatctttcccgctgacgggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctat |
6596293 |
T |
|
| Q |
233 |
tgacttcctatacaaaaatgacttgttactcattgccgattgtttcc |
279 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6596294 |
aaactttctctacaaaaatgacttgttactcattgctgattgtttcc |
6596340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 6423969 - 6423921
Alignment:
| Q |
166 |
ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac |
214 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6423969 |
ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgac |
6423921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 6395603 - 6395553
Alignment:
| Q |
164 |
ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
6395603 |
ctttcccacagatgggttgcaagctctctcccaaaatattacaactttgac |
6395553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 6424032 - 6423989
Alignment:
| Q |
52 |
ttcgcttaatctctagtttcccgttgaagaaactcacatcgctc |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6424032 |
ttcgcttaatctctagtttcccattgaagaaactcacgtcgctc |
6423989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 6410761 - 6410711
Alignment:
| Q |
164 |
ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac |
214 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
6410761 |
ctttcccataaatgggttgcaagttttctcccaaaacattacaactttgac |
6410711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 19633166 - 19633116
Alignment:
| Q |
164 |
ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac |
214 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||| ||| ||||||||||| |
|
|
| T |
19633166 |
ctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgac |
19633116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 7132360 - 7132323
Alignment:
| Q |
175 |
atgggttgcaagctttctcccaaaacataacaactttg |
212 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
7132360 |
atgggttgcgagctttctcccaaaacattacaactttg |
7132323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 7135283 - 7135246
Alignment:
| Q |
175 |
atgggttgcaagctttctcccaaaacataacaactttg |
212 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
7135283 |
atgggttgcgagctttctcccaaaacattacaactttg |
7135246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 7138206 - 7138169
Alignment:
| Q |
175 |
atgggttgcaagctttctcccaaaacataacaactttg |
212 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
7138206 |
atgggttgcgagctttctcccaaaacattacaactttg |
7138169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 14809765 - 14809717
Alignment:
| Q |
164 |
ctttcccacagatgggttgcaagctttctcccaaaacataacaactttg |
212 |
Q |
| |
|
||||||| || | |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
14809765 |
ctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttg |
14809717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 553823 - 553775
Alignment:
| Q |
166 |
ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac |
214 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
553823 |
ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgac |
553775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University