View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_high_27 (Length: 256)
Name: NF8560_high_27
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 44516266 - 44516052
Alignment:
| Q |
1 |
tattgaattgaaacacaacacaagtataag--------gtatactttgtgtgtgaaaatagatacaggaagtgccaca--agtaaaacaatacaagtagc |
90 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44516266 |
tattgaattgaaacacaacacaagtacaagtgtacaaggtatactttgtgtgtgaaaatagatacaggaagtgccacacaagtaaaacaatacaagtagc |
44516167 |
T |
|
| Q |
91 |
aacaggaaccaacagcataccaaacacctgataacaaaagcactaaccaaaagataactaaacaatcaaagccactccctattcaaacagcaaaccaaaa |
190 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44516166 |
aacaggaaccaacagcataccaaacacccgataacaaaagcactgaccaaaagataactaaacaatcaaagccactccctatgcaaacagcaaaccaaaa |
44516067 |
T |
|
| Q |
191 |
ataaaccaccaccac |
205 |
Q |
| |
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||||||||||||||| |
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| T |
44516066 |
ataaaccaccaccac |
44516052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 44516025 - 44515997
Alignment:
| Q |
215 |
tatcacaatggctccataagcgatgctcc |
243 |
Q |
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| T |
44516025 |
tatcacaatggctccataagcgatgctcc |
44515997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 1917922 - 1917806
Alignment:
| Q |
1 |
tattgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaatacaagtagcaacaggaacc |
100 |
Q |
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||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| | || |||||||| |
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| T |
1917922 |
tattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtgacacaagcaaaacaatacaagaaacaccaggaacc |
1917823 |
T |
|
| Q |
101 |
aacagcataccaaacac |
117 |
Q |
| |
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|| |||| ||||||||| |
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| T |
1917822 |
aatagcaaaccaaacac |
1917806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32252615 - 32252499
Alignment:
| Q |
1 |
tattgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaatacaagtagcaacaggaacc |
100 |
Q |
| |
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||||| ||| ||||||||||||| || || ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| | || || |||| |
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| T |
32252615 |
tattgcattaaaacacaacacaaatacaatgtatactttgtgtgtgaaaatagatacagaaagtgacacaagcaaaacaatacaagaaacaccaataacc |
32252516 |
T |
|
| Q |
101 |
aacagcataccaaacac |
117 |
Q |
| |
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||||||| ||||||||| |
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| T |
32252515 |
aacagcaaaccaaacac |
32252499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 35105829 - 35105754
Alignment:
| Q |
2 |
attgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaat |
81 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| |||||||| |
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| T |
35105829 |
attgaaatgaaacacaacacac----aaggtatactttgtgtgtgaaaacagatacatgaagtgaaacaagcaaaacaat |
35105754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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