View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_high_28 (Length: 252)
Name: NF8560_high_28
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39457445 - 39457689
Alignment:
| Q |
1 |
aaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggctataaagtccgctgataaacggcttaaaaaattggccac |
100 |
Q |
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| T |
39457445 |
aaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggctataaagtccgctgataaacggcttaaaaaattggccac |
39457544 |
T |
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| Q |
101 |
aaagcaactttttgttgtttccaaatccgctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatgg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457545 |
aaagcaactttttgttgtttccaaatcctctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatgg |
39457644 |
T |
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| Q |
201 |
agagttttaagactaggtaaatatatatccacttgagaattatct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39457645 |
agagttttaagactaggtaaatatatatccacttgagaaatatct |
39457689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 39424687 - 39424559
Alignment:
| Q |
117 |
gtttccaaatccgctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatggagagttttaagactag |
216 |
Q |
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|||||||||||| |||||| |||||| | ||||| || ||| |||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||||| |
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| T |
39424687 |
gtttccaaatcctctagaataggacaacttaataaaatcttcattagatgctcatgacattcaaaatcaaccctattcaaatggagagttttaagactag |
39424588 |
T |
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| Q |
217 |
gtaaatatatatccacttgagaattatct |
245 |
Q |
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| T |
39424587 |
gtaaatgtaaatccacttgagaattatct |
39424559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 245
Target Start/End: Complemental strand, 39437726 - 39437582
Alignment:
| Q |
101 |
aaagcaactttttgttgtttccaaatccgctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatgg |
200 |
Q |
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|||||||||||| ||||||||||||||| |||||| |||||| | ||||| ||| ||| | || || |||| | || |||||||| ||||||||||||| |
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| T |
39437726 |
aaagcaacttttagttgtttccaaatcctctagaataggacagcttaataaaagcttcatcagttgttcatgagatccaaaatcaaccttatgcaaatgg |
39437627 |
T |
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| Q |
201 |
agagttttaagactaggtaaatatatatccacttgagaattatct |
245 |
Q |
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||||||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
39437626 |
agagtttgaagactaggtaaatataaatccacttgagaaatatct |
39437582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 39463078 - 39463201
Alignment:
| Q |
115 |
ttgtttccaaatccgctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatggagagttttaagact |
214 |
Q |
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|||||||||||||| ||| || |||||| | ||||| ||| ||| |||||||||||| |||| ||| |||| | ||| |||||||||| ||||| |||| |
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| T |
39463078 |
ttgtttccaaatcctctaaaataggacagcttaataaaagcttcattagatgctcatgacatccaaactcaaccctattcaaatggagaattttaggact |
39463177 |
T |
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| Q |
215 |
aggtaaatatatatccacttgaga |
238 |
Q |
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||||||||||| |||||||||||| |
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| T |
39463178 |
aggtaaatataaatccacttgaga |
39463201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39424800 - 39424739
Alignment:
| Q |
1 |
aaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggct |
62 |
Q |
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|||||||||||| |||||||| |||||| |||||| |||||||||||| |||| |||||| |
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| T |
39424800 |
aaaccatactaagtggaatatagaattcagtaatccttgccttgatcaaattgggaaaggct |
39424739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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