View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_high_6 (Length: 418)
Name: NF8560_high_6
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 40838030 - 40838430
Alignment:
| Q |
1 |
tcaatgacacctttttgaacatggacagaacccaaatattctaatgtaacatcatccgccacatctacctttccttttgctcggagttgaacagctgaat |
100 |
Q |
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| T |
40838030 |
tcaatgacacctttttgaacatggacagaacccaaatattctaatgtaacatcatccgccacatctacctttccttttgctcggagttgaacagctgaat |
40838129 |
T |
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| Q |
101 |
cacgggtctacgatccaaaattcataaatatcataaggcatgataatcaagacggtcaaaattatgaaataacaattgggcacatattaataggatatta |
200 |
Q |
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| T |
40838130 |
cacgggtctacaatccaaaattcataaatatcataaggcatgataatcaagacagtcaaaattatgaaataacaattggacacatattaataggatatta |
40838229 |
T |
|
| Q |
201 |
ggcaagtagaaagttgcataaaatactaacgacgattggtgccgttttctacaagtagaagttctagctcacatctttttggttttcatgattgagacat |
300 |
Q |
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| T |
40838230 |
ggcaagtagaaagttgcataaaatactaacgacgattggtgccgttttctacaagtagaagttctagctcacatctttttcgttttcatgattgagacat |
40838329 |
T |
|
| Q |
301 |
tggtgtcgatttgacaaagaaatataaaataaatatatgagttgagttttgaggcgctcacatacgttttatcttatttttgataaactaacatcaatta |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
40838330 |
tggtgtcgatttaacaaagaaatataaaataaatatatgagttgagttttgaggcgctcacatatgttttatcttatttttgacaaactaacatcaatta |
40838429 |
T |
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| Q |
401 |
a |
401 |
Q |
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| T |
40838430 |
a |
40838430 |
T |
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