View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_high_8 (Length: 404)
Name: NF8560_high_8
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 17170951 - 17170580
Alignment:
| Q |
19 |
agagacacattaattgattttaatagttttaggaataaattaaattgacagtttattctttcataaatatgtggctggcattcatcatccttacataaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17170951 |
agagacacattaattgattttaatagttttaggaataaattaaattgacagtttattctttcataaatatgtggctggcattcatcatccttacataaat |
17170852 |
T |
|
| Q |
119 |
ttgcaaaagatattaaaagacatgtcccactccacttttttgtcacaaaaatatatcaatcacatcacatgcaaacaaaataaataagggtaaggattca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17170851 |
ttgcaaaagatattaaaagacatgtcccactccacttttttgtcacaaaaatatatcaatcacatcacatgcaaacaaaataaataagggtaaggattca |
17170752 |
T |
|
| Q |
219 |
aatgtaatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttcannnnnnnaattttc |
318 |
Q |
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|| | |||||||||||| ||| ||||| ||||||||| | || ||||| ||||||||| ||||||||||| ||||| || ||||| | |
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| T |
17170751 |
-----aacgcagtaagttttacattagaatttatgttgttaattttttaaaaatataaaaagtgttatttttattttaaaattttctttttttaatttcc |
17170657 |
T |
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| Q |
319 |
ttaaccggtggttaacacgaataaataaataatgtcaaattacacttccaaatcaacaaaatcttacacagaataat |
395 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
17170656 |
ttaaccagtggttaacacgaataaataaataatgtcaaattacacttcccaatcaacaaaatcttacacaaaataat |
17170580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 40995901 - 40995822
Alignment:
| Q |
224 |
aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttc |
303 |
Q |
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| T |
40995901 |
aatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttc |
40995822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 6108586 - 6108635
Alignment:
| Q |
250 |
tgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa |
299 |
Q |
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||||||||||| || ||||||||||||||||||||||||| ||| ||||| |
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| T |
6108586 |
tgtgttgttaactcctcaaaaacataaaaagtattattttcattttaaaa |
6108635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 27756467 - 27756542
Alignment:
| Q |
224 |
aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa |
299 |
Q |
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|||||||||||| |||| || ||||||||||||| || ||||||||| |||||||||| ||||||| ||| ||||| |
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| T |
27756467 |
aatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa |
27756542 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 3427863 - 3427938
Alignment:
| Q |
224 |
aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa |
299 |
Q |
| |
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|||||||||||| || || ||| ||||||||| || |||||||||||||||||||| ||||||| ||| ||||| |
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| T |
3427863 |
aatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa |
3427938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 1408616 - 1408694
Alignment:
| Q |
224 |
aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaactt |
302 |
Q |
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|||||||||| |||||| || || ||||||||| || |||||||||||||||||||| ||||||| ||| |||||||| |
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| T |
1408616 |
aatgtagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactt |
1408694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 4941275 - 4941199
Alignment:
| Q |
223 |
taatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa |
299 |
Q |
| |
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||||||||||| | || | || ||| ||||||||| || || |||||| |||||||||| ||||||||||| ||||| |
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| T |
4941275 |
taatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa |
4941199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 19187144 - 19187215
Alignment:
| Q |
231 |
taagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaactt |
302 |
Q |
| |
|
|||||||||| || ||||||||||||| || ||||||||| |||||||||| || |||| ||| |||||||| |
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| T |
19187144 |
taagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactt |
19187215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 21067613 - 21067692
Alignment:
| Q |
224 |
aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttc |
303 |
Q |
| |
|
|||||||||||| |||| || ||| ||||||||| | ||||||||| ||||||||||| || ||| ||| ||||||||| |
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| T |
21067613 |
aatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttc |
21067692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 38282507 - 38282574
Alignment:
| Q |
237 |
ttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttca |
304 |
Q |
| |
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|||| |||||||||||||||| || |||| ||||| ||||||||| ||||||| ||| ||||| |||| |
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| T |
38282507 |
ttacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaatttca |
38282574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 4614358 - 4614283
Alignment:
| Q |
224 |
aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa |
299 |
Q |
| |
|
|||||||||||| |||| ||| ||||| |||||| || || |||||||||| |||||| |||||||||| ||||| |
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| T |
4614358 |
aatgtagtaagtattacattagaatttatgttgtcaactcatcaaaaacatgaaaagtgctatttttattttaaaa |
4614283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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