View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_high_9 (Length: 387)
Name: NF8560_high_9
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 22730080 - 22730432
Alignment:
| Q |
19 |
tgaaaatcatgtttggaatagcattaagtttcaatcaagaaggataaacagattagtgaattgttggaaaagaaaactaa-tacaatgtacaatgaccaa |
117 |
Q |
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| T |
22730080 |
tgaaaatcatgtttgaaatagaattaagttgcattcgagaaggataagcagattagtgaattgttgaaaaagaaaactaaatacaatgaacaatgaccaa |
22730179 |
T |
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| Q |
118 |
atgcttactcagcataacttgttttccaattagagggaaaaagcataccctttcgatagagggaaaaactccatctttaatgtttaccttttcaggcgtg |
217 |
Q |
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| T |
22730180 |
attcttactcagcaaaacctgtttttcaattagagggaaaaaacataccctttcgatagagggaaaaactccatctttaatgtttaccttttcaggcgtg |
22730279 |
T |
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| Q |
218 |
tttgtgatgtacccaattcgcctaatgaattaatttagagtttaggtttttggattaaaattagcataaaaaggcccccttaccccactaattagatgct |
317 |
Q |
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| T |
22730280 |
tttgtgacatatccaattctcctaatgaattaatttagagtttaaatttttggattaaaattagtataaaaaggactccttacccccctaattagatgca |
22730379 |
T |
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| Q |
318 |
aaatttcaaagttaaaacaaattacttttgatattgtttcgttttatgttgtt |
370 |
Q |
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| T |
22730380 |
aaatttcaaagttaaaacaaattacttttgatattgtttcgttttatgttgtt |
22730432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 3168842 - 3168488
Alignment:
| Q |
19 |
tgaaaatcatgtttggaatagcattaagtttcaatcaagaaggataaacagattagtgaattgttggaaaagaaaactaatacaatgtacaatgaccaaa |
118 |
Q |
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| T |
3168842 |
tgaaaatcatgtttgaaatagcattaagttgcattcgagaaggataaacagattattgaattgttgaaaaagaaaactaatacaatgaacaatgaccaaa |
3168743 |
T |
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| Q |
119 |
tgcttactcagcataacttgttttccaattagagggaaaaagcataccctttcgatagagggaaaaactccatctttaatgtttaccttttcaggcgtgt |
218 |
Q |
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| T |
3168742 |
tgcttacttagcaaaatctgttttgcaattagagggaaaaagcataccctttcgatagagggaagaactccatctttaatgtttaccttttcaggcgtgt |
3168643 |
T |
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| Q |
219 |
ttgtgatgtacccaattcgcctaatgaattaatttagagtttaggtttttggattaaaattagcataaaaagg-cccccttaccccactaattagatgct |
317 |
Q |
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| T |
3168642 |
ttgtgacatatcaaatacgcctaatgatttaatttagagtttagatttttggtttataattagtataaaaaggacccccttacccccctaattagattaa |
3168543 |
T |
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| Q |
318 |
aaatttcaaagttaaaacaaattacttttgatattgtttcgttttatgttgttgt |
372 |
Q |
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| T |
3168542 |
caatttcaaagttagaacaaattacttttgatattgtttggttttatgttgttgt |
3168488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 3131573 - 3131405
Alignment:
| Q |
179 |
ggaaaaactccatctttaatgtttaccttttcaggcgtgtttgtgatgtacccaattcgcctaatgaattaatttagagtttaggtttttggattaaaat |
278 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| || || | ||||||||||||| |||||| | ||||||| ||||||| ||| ||| |
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| T |
3131573 |
ggaaaaactccatctttaatgtttaccttttc-ggcgtgtttgagacatatcaaattcgcctaatggattaatctcgagtttatctttttgggttagaat |
3131475 |
T |
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| Q |
279 |
tagcataaaaaggcccccttaccccactaattagatgctaaatttcaaagttaaaacaaattacttttga |
348 |
Q |
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| T |
3131474 |
cagtataaaaaggaccccttactcccataattagatgcacaatttaaaaattagaaccaattacttttga |
3131405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 3131698 - 3131614
Alignment:
| Q |
67 |
cagattagtgaattgttggaaaagaaaactaatacaatgtacaatgaccaaatgcttactcagcataacttgttttccaattaga |
151 |
Q |
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|||||| ||||||||||| |||| | ||||||||||||| ||||||| | ||||||||||||| || ||||||||| ||||| |
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| T |
3131698 |
cagatttgtgaattgttgaaaaatataactaatacaatgaacaatgattagatgcttactcagcgaaaactgttttccagttaga |
3131614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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