View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_1 (Length: 696)
Name: NF8560_low_1
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 350 - 602
Target Start/End: Original strand, 35949767 - 35950020
Alignment:
| Q |
350 |
tattttcacagagaataatctccattttgagcataggatcaaatttactttttggagtatctccaactttgtatccattttagtgaaggcaagaacacag |
449 |
Q |
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| T |
35949767 |
tattttcacagagaataatctccattttgagcataggatcaaatttactttttggagtatctccaactttgtatccattttagtgaaggcaagaacacag |
35949866 |
T |
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| Q |
450 |
ttagtttgacggacac-aaccattcttcctttctctttaacaatttgttccaacaaacaataacattacttctctaacactcaattccaatttccaccta |
548 |
Q |
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| T |
35949867 |
ttagtttgacggacaccaaccattcttcctttctctttaacaatttgttccaacaaacaataacattacttctctaacactcaattccaatttccaccta |
35949966 |
T |
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| Q |
549 |
tatcataggatgtcaaaatgtatcatacttattctcaaaaccaatgtttcttat |
602 |
Q |
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| T |
35949967 |
tatcataggatgtcaaaatgtatcatacttattctcaaaacgaatgtttcttat |
35950020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 37 - 301
Target Start/End: Original strand, 35949484 - 35949748
Alignment:
| Q |
37 |
acaaaattaacactgtatatagaaactcgaataaaaatacgctcaatttaagtgttggtttgattgaaaaaagagataataaattaataatctgtgatgt |
136 |
Q |
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| T |
35949484 |
acaaaattaacactgtatatagaaactcgaataaaaatacactcaatttaattgttggtttgattgaaaaaagagataataaattaataatatgtgatgt |
35949583 |
T |
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| Q |
137 |
ttgatgtcaactttatgtcaaaataacatttttaaatactaaatagtaaatactattgtttttggttctctttagatttgcgtgagtatagttcacctag |
236 |
Q |
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| T |
35949584 |
ttgatgtcaactttatgtcaaagtaacatttttaaatactaaatagtaaataccattgtttttggttctctttagatttgcgtgagtatagtttacctag |
35949683 |
T |
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| Q |
237 |
aaaattgttgatattaagtctatgagaatcatttaaagaaaaacaagttatagcaaaatttctaa |
301 |
Q |
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| T |
35949684 |
aaaattgttgatattaagtctatgagaatcatttaaagaaaaacaagttatagcaaaatttctaa |
35949748 |
T |
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