View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_13 (Length: 364)
Name: NF8560_low_13
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 35133776 - 35134113
Alignment:
| Q |
1 |
ttacatagattagattagttgagttgagt-----gtgttaacgttggtacttgtaacgtgcgaagatccacttctgaggagacaaaccgggtctgcttct |
95 |
Q |
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| T |
35133776 |
ttacatagattagattagttgagttgagtcgagtgtgttaacgttggtacttgtaacgtgcgaagatccacttctgaggagacaaaccgggtctgcttct |
35133875 |
T |
|
| Q |
96 |
tcataatgaccgctactatatgcttttaccattttctccttctctttctcccacattatccattctgtcatgttcacttttttactacagtccccaggca |
195 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35133876 |
tcataatgaccgctgctatatgcttttaccattttctccttctctttctcccacattatccattctgtcatgttcacttttttactacagtccccaggca |
35133975 |
T |
|
| Q |
196 |
catgtggttgtttggtttctattcgtgtaacaaaaaattgactcatccaaatattcacgtggatacagtgcaagagtatgagtaaa----taattacttt |
291 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35133976 |
catgtggttgtttggtttctattcgtgtaa----------------ccaaatattcacgtggatacagtgcaagagtatgagtaaataattaattacttt |
35134059 |
T |
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| Q |
292 |
gcctcttgaaattgtacgaatcggatattttacttgatgaaacttccaaatagg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35134060 |
gcctcttgaaattgtacgaatcggatattttacttgatgaaacttccaaatagg |
35134113 |
T |
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