View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8560_low_14 (Length: 354)
Name: NF8560_low_14
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_14 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 114 - 334
Target Start/End: Original strand, 35127557 - 35127775
Alignment:
| Q |
114 |
cttaaggtgctacacctatgtactgacgaaaggaaaagtacgtttcgaaaagccttcaagagtgattgtgatttgcttatggtgttgaaagagtctttga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35127557 |
cttaaggtgctacacctatgtactgacgaaaggaaaagtacgtttcgaaaagccttcaagagtgattgtgatttgcttatggtgttgaaagagtctttga |
35127656 |
T |
|
| Q |
214 |
ggattgttgcgcaatgtatgtttggaaagtttatgagttttcatgtcatgagtcacacatgtcatcatcatgatggtttggtttgtgttattgttggggc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35127657 |
ggattgttgcgcaatgtatgtttggaaagtt--tgagttttcatgtcatgagtcacacatgtcatcatcatgatggtttggtttgtgttattgttggggc |
35127754 |
T |
|
| Q |
314 |
aggggaggtcaggagctacat |
334 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35127755 |
aggggaggtcaggagctacat |
35127775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 35149560 - 35149737
Alignment:
| Q |
114 |
cttaaggtgctacacctatgtactgacgaaaggaaaagtacgtttcgaaaagccttcaagagtgattgtgattt-gcttatggtgttgaaagagtctttg |
212 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||||| ||| |||||| || | ||||||||| ||| ||| | ||||||||||| | ||||||||| |
|
|
| T |
35149560 |
cttaaggcgctacacctatgtattgacaaaaggaaaagtatgttacgaaaatcccttaagagtgatcgtgtttttgtttatggtgttggaggagtctttg |
35149659 |
T |
|
| Q |
213 |
aggattgttgcgcaatgtatgtttggaaagtttatgagttttcatgtcatgagtcacacatgtcatcatcatgatggt |
290 |
Q |
| |
|
| ||| ||||||||||| ||||||||||| | |||||||||||||| ||||||| || |||||||||||| ||||||| |
|
|
| T |
35149660 |
aagatggttgcgcaatgaatgtttggaaaatgtatgagttttcatgccatgagtaacgcatgtcatcatcctgatggt |
35149737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 12700754 - 12700786
Alignment:
| Q |
75 |
tttatgcctaaggctcctaaaatgctaggaacg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12700754 |
tttatgcctaaggctcctaaaatgctaggaacg |
12700786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 16538 - 16580
Alignment:
| Q |
225 |
caatgtatgtttggaaagtttatgagttttcatgtcatgagtc |
267 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
16538 |
caatggatgtttggaatgtgtatgagttttcatgtcatgagtc |
16580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 56366464 - 56366418
Alignment:
| Q |
68 |
ttttcactttatgcctaaggctcctaaaatgctaggaacggctctgc |
114 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
56366464 |
ttttcattctatgcctaaggcccctaaaatgctaggaacggccctgc |
56366418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 37548360 - 37548319
Alignment:
| Q |
68 |
ttttcactttatgcctaaggctcctaaaatgctaggaacggc |
109 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
37548360 |
ttttcattctatgcctaaggcccctaaaatgctaggaacggc |
37548319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 10015328 - 10015276
Alignment:
| Q |
62 |
ggtccattttcactttatgcctaaggctcctaaaatgctaggaacggctctgc |
114 |
Q |
| |
|
||||| |||||| | |||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
10015328 |
ggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccctgc |
10015276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 30082019 - 30081987
Alignment:
| Q |
77 |
tatgcctaaggctcctaaaatgctaggaacggc |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
30082019 |
tatgcctaaggcccctaaaatgctaggaacggc |
30081987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 66843 - 66875
Alignment:
| Q |
77 |
tatgcctaaggctcctaaaatgctaggaacggc |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
66843 |
tatgcctaaggcccctaaaatgctaggaacggc |
66875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University