View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_15 (Length: 348)
Name: NF8560_low_15
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 5735520 - 5735204
Alignment:
| Q |
18 |
caatttaccaatgctatcataatttttacacaatttagttgagcaacttttgttctctgcatatttttacataattgtagttttcctgaatacttgattt |
117 |
Q |
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| T |
5735520 |
caatttgctaatgctattataatttttacacaatttagttgagcaacttttgttctctgcatatttttacataattgtagtattcatgaatacttgattt |
5735421 |
T |
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| Q |
118 |
gtatgataacccttagctgaatcaagaattaattatgcctcttaaaagataaaaaacaatgtgatgaataatcttatgcattttagaaaattttgaaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5735420 |
gtatgataacccttagctgaatcaagaattaattatgcctcttaaaagataaaaaacaatgtgatgaataatcctatgcattttagaaaattttgaaatc |
5735321 |
T |
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| Q |
218 |
gacaaaatgcattgta---nnnnnnnnncaataaacaacctcattcaattaaaaagagaaacagaatacaaaggttgttctacttgcatagagacattca |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
5735320 |
gacaaaatgcattgtattttttttttttcaataaacaacctcattcaattaaaaagagaaacataatacaaaggctgttctacttgcatagagacattca |
5735221 |
T |
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| Q |
315 |
ccagctaagttttgata |
331 |
Q |
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||||||||||||||||| |
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| T |
5735220 |
ccagctaagttttgata |
5735204 |
T |
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