View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_low_17 (Length: 340)

Name: NF8560_low_17
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_low_17
NF8560_low_17
[»] chr5 (13 HSPs)
chr5 (17-168)||(26406185-26406336)
chr5 (230-327)||(26406388-26406485)
chr5 (230-327)||(10627529-10627625)
chr5 (230-327)||(42238423-42238519)
chr5 (230-327)||(31782377-31782474)
chr5 (230-327)||(11962356-11962452)
chr5 (251-327)||(17841192-17841268)
chr5 (251-327)||(16093235-16093311)
chr5 (230-327)||(22672997-22673095)
chr5 (230-327)||(28786567-28786661)
chr5 (269-327)||(40222928-40222986)
chr5 (286-327)||(10757436-10757477)
chr5 (286-326)||(10749961-10750001)
[»] chr1 (7 HSPs)
chr1 (231-327)||(14997205-14997301)
chr1 (251-327)||(4144627-4144702)
chr1 (230-327)||(3091027-3091124)
chr1 (251-327)||(25134234-25134310)
chr1 (230-323)||(46783313-46783405)
chr1 (230-302)||(9314565-9314638)
chr1 (268-326)||(41647181-41647238)
[»] chr8 (10 HSPs)
chr8 (230-327)||(30423378-30423474)
chr8 (230-314)||(15949714-15949797)
chr8 (230-327)||(17799347-17799443)
chr8 (230-327)||(3276461-3276557)
chr8 (230-275)||(15944878-15944923)
chr8 (251-327)||(26268174-26268250)
chr8 (262-327)||(21034032-21034097)
chr8 (230-326)||(28228681-28228778)
chr8 (251-325)||(33032819-33032893)
chr8 (230-327)||(23179478-23179580)
[»] chr4 (16 HSPs)
chr4 (230-316)||(32273872-32273959)
chr4 (230-327)||(25613879-25613975)
chr4 (230-314)||(5336700-5336786)
chr4 (230-327)||(36771559-36771655)
chr4 (230-302)||(16631370-16631444)
chr4 (251-327)||(16688883-16688959)
chr4 (230-325)||(4555983-4556077)
chr4 (230-327)||(4558473-4558569)
chr4 (230-327)||(16638990-16639087)
chr4 (230-327)||(36769642-36769738)
chr4 (251-327)||(31300586-31300662)
chr4 (230-327)||(4570256-4570352)
chr4 (230-327)||(4885037-4885133)
chr4 (249-302)||(7050211-7050265)
chr4 (230-327)||(18587129-18587229)
chr4 (251-316)||(47566666-47566731)
[»] chr6 (9 HSPs)
chr6 (230-327)||(17066015-17066111)
chr6 (251-325)||(26643339-26643413)
chr6 (251-325)||(26749305-26749379)
chr6 (254-327)||(13467411-13467486)
chr6 (230-327)||(12166068-12166165)
chr6 (230-327)||(25941832-25941931)
chr6 (269-327)||(33215990-33216048)
chr6 (251-302)||(19701846-19701898)
chr6 (261-327)||(22342751-22342820)
[»] chr3 (15 HSPs)
chr3 (230-323)||(13893630-13893721)
chr3 (230-327)||(47878094-47878190)
chr3 (230-318)||(11079690-11079777)
chr3 (230-327)||(7418226-7418320)
chr3 (230-327)||(27761909-27762005)
chr3 (230-325)||(48390223-48390319)
chr3 (237-280)||(15823582-15823625)
chr3 (251-327)||(3330055-3330131)
chr3 (251-325)||(20031260-20031334)
chr3 (251-327)||(10949203-10949279)
chr3 (230-327)||(10897168-10897267)
chr3 (269-327)||(4535778-4535836)
chr3 (261-327)||(38003032-38003098)
chr3 (230-323)||(47882806-47882897)
chr3 (238-280)||(46966577-46966619)
[»] chr2 (5 HSPs)
chr2 (230-327)||(28458751-28458847)
chr2 (262-327)||(38191175-38191240)
chr2 (230-318)||(37170676-37170763)
chr2 (230-327)||(30479157-30479256)
chr2 (230-327)||(27517559-27517658)
[»] chr7 (10 HSPs)
chr7 (230-326)||(21369806-21369902)
chr7 (251-327)||(44010693-44010769)
chr7 (230-327)||(44016584-44016680)
chr7 (230-327)||(44143790-44143886)
chr7 (272-327)||(2075278-2075331)
chr7 (251-327)||(34546820-34546899)
chr7 (251-327)||(42006826-42006902)
chr7 (261-327)||(44512476-44512545)
chr7 (262-327)||(7464470-7464538)
chr7 (232-272)||(45366804-45366844)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 26406185 - 26406336
Alignment:
Q  17 agttgtaaaatttaaagatattttataacaaaaaattacaagagtgtcgtataggcatatcaactgatttagttcttgcaaaactgcaaataaagtcttt 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406185 agttgtgaaatttaaagatattttataacaaaaaattacaagagtgtcatataggcatatcaactgatttagttcttgcaaaactgcaaataaagtcttt 26406284  T
Q  117 attcaaataaatttaatgatctcattcaactataggcatattctgattttga 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26406285 attcaaataaatttaatgatctcattcaactataggcatattctgagtttga 26406336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 26406388 - 26406485
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406388 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 26406485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 10627625 - 10627529
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||    
T  10627625 tcaaatcaagcgggtgacaatttaattcaaacaaaaataaacaacaagagataaaggaagaaggagaacac-aagaatctgtttacccagttcagtct 10627529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 42238519 - 42238423
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  42238519 tcaaatcaagcgggtagcaa-ataatccaaacaaaaataaacagcaagagataaaaggaagaaggagaacac-aagaatttgtttacccagttcggtct 42238423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 31782377 - 31782474
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaat-aaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||||| |||| ||||| ||||||||||||| |||||| |||||||| ||||||||||    
T  31782377 tcaaatcaagcgggtgacaatataattcaaacaaaaataaaacagcaacagataaaaggcagaaggagaacac-aagaatctgtttacc-agttcggtct 31782474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 11962356 - 11962452
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  11962356 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacaacaagagataaaaggaagaaggagaacac-aagaatttgtttacccagttcggtct 11962452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 17841192 - 17841268
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||    
T  17841192 ataattcaaacaaaaataaatagcaagagataaaaggaagaaggagaacac-aataatttgtttacccagttcggtct 17841268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 16093235 - 16093311
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||    
T  16093235 ataattcaaacaaaagtaaacaacaagagataaaaggaagaaggagaacac-aagaatttgtttatccagttcggtct 16093311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 22673095 - 22672997
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaagg--agaacacaaagaatttgtttacctagttcggtc 326  Q
    |||||||||| ||||  ||| ||||||||| ||||||||||||||||||||| |||||||||  |  ||||||| ||||||||||||||| |||||||||    
T  22673095 tcaaatcaagcgggtagcaa-ataattcaaacaaaaataaacagcaagagataaaaggaagagagaaagaacac-aagaatttgtttacccagttcggtc 22672998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 28786661 - 28786567
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaat-aaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||||  ||||||||||||||||| |  |||||||||||||| ||||||||||||| ||||||||||    
T  28786661 tcaaatcaagcgggtagcaa-ataattcaaacaaaaagcaaacagcaagagataaaag--gaaggagaacacaa-gaatttgtttacccagttcggtct 28786567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 40222986 - 40222928
Alignment:
Q  269 aacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||| ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||    
T  40222986 aacaacaagagataaaaggaagaaagagaacacaat-aatttgtttacctagttcggtct 40222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 10757477 - 10757436
Alignment:
Q  286 gaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||    
T  10757477 gaagaagaagaacacaaagaatttgttgacccagttcggtct 10757436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 10750001 - 10749961
Alignment:
Q  286 gaagaaggagaacacaaagaatttgtttacctagttcggtc 326  Q
    ||||||| ||||||||||||||||||| ||| |||||||||    
T  10750001 gaagaagaagaacacaaagaatttgttgacccagttcggtc 10749961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 14997301 - 14997205
Alignment:
Q  231 caaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14997301 caaatcaagcaggtgacaatataattcaagcaaaaataaacagcaatagataaaggaagaaagagaacacaaataatttgtttacctagttcggtct 14997205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 4144627 - 4144702
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  4144627 ataattcaaacaaaagtaaacagcaagagataaaggaagaaggagaacac-aagaatttgtttacccagttcggtct 4144702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 3091027 - 3091124
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| || |||||||||||||||| |||||||||| | ||||||||||| |||||||| ||||||| |||||| |||||| | ||||||||||    
T  3091027 tcaaatcaagcggatgacaatataattcaaacaaaaataaatatcaagagataaagggaagaagaagaacac-aagaatctgtttatccagttcggtct 3091124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 25134310 - 25134234
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| |||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  25134310 ataattcaaacaaaaacaaacagcaaaagataaaaggaagaaggagaacac-aagaatttgtttacccacttcggtct 25134234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 46783405 - 46783313
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcg 323  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||  |  ||||||| ||||||| || |||||||||| | ||||||    
T  46783405 tcaaattaagtgggtgaaaatataattcaagcaaaaataaacagcacgagaggagagaagaagaagaacac-aataatttgtttatccagttcg 46783313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 9314565 - 9314638
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaa-taaacagcaagagataaaggaagaaggagaacacaa 302  Q
    ||||||||||||| |||||||  |||||||||||||| |||||| ||||| | |||||| ||||||||||||||    
T  9314565 tcaaatcaagtggatgacaatgaaattcaagcaaaaattaaacaacaagatacaaaggatgaaggagaacacaa 9314638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 41647238 - 41647181
Alignment:
Q  268 aaacagcaagagataaaggaagaaggagaacacaa-agaatttgtttacctagttcggtc 326  Q
    ||||||||||||| |||||||||  |||||||||| |||||||||| ||| |||||||||    
T  41647238 aaacagcaagagagaaaggaaga--gagaacacaagagaatttgttgacccagttcggtc 41647181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 30423474 - 30423378
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  30423474 tcaaatcaagcgggtgacaatataattcaaacaaaaataaacagcaagagataaaggaagaaggagaacac-aagaatttgtttaccctgttcggtct 30423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 15949797 - 15949714
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgttta 314  Q
    |||||||||||| ||||||||||||||| || || | |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  15949797 tcaaatcaagtgagtgacaatataattctagtaata-taaatagcaaaagataaaggaagaaggagaacacaaagaatttgttta 15949714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 17799347 - 17799443
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  17799347 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacaacaagagataaaaggaagaaggagaacac-aagaatttgtttacccagttcggtct 17799443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 3276557 - 3276461
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||| ||| ||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||    
T  3276557 tcaaatcaagcgggtagcaa-ataatccaaacaaaagtaaacagcaagagataaaaggaagaagaagaacacaa-gaatttgtttacccagttcggtct 3276461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 15944923 - 15944878
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagca 275  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  15944923 tcaaatcaagtgggtgaaaatataattcaagcaaaaataaacagca 15944878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 26268174 - 26268250
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||  ||||||||||    
T  26268174 ataattcaaacaaaagtaaacagcaagagataaaaggaagaagtagaacac-aagaatttgtttactcagttcggtct 26268250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 21034097 - 21034032
Alignment:
Q  262 aaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  21034097 aaaagtaaacagcaagagataaaaggaagaaagagaacacaa-gaatttgtttacccagttcggtct 21034032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 28228778 - 28228681
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaa-taaacagcaagagataaaggaagaaggagaacac-aaagaatttgtttacctagttcggtc 326  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| | ||| ||  |  ||||||| ||||||| ||||||| ||||||||||||||||||    
T  28228778 tcaaatcaagtggttgacaatataatttaagcaaaaattaaacggtaag-gaggagagaagaagaagaacacaaaagaatgtgtttacctagttcggtc 28228681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 33032893 - 33032819
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    |||||| || ||||| ||||| |||||||||||| ||||||||||||||||||| | ||| |||||| ||||||||    
T  33032893 ataattaaaacaaaagtaaacggcaagagataaaaggaagaaggagaacacaaa-attttttttacccagttcggt 33032819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 23179478 - 23179580
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataa-------aggaagaaggagaacacaaagaatttgtttacctagttc 322  Q
    |||||||||| ||||  ||| ||||||||| ||||| |||||||||||||||||       | ||||||| ||||||| ||||||||||||||| |||||    
T  23179478 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacagcaagagataaaaggaagaagaagaagaagaacac-aagaatttgtttacccagttc 23179575  T
Q  323 ggtct 327  Q
    |||||    
T  23179576 ggtct 23179580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 32273872 - 32273959
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaa-agaatttgtttacc 316  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||| ||||||||||||||    
T  32273872 tcaaatcaagtggttgacaatataattcaagcaaaaataaacagcaagagagaagagaagaagaagaacacaagagaatttgtttacc 32273959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 25613879 - 25613975
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||||  ||||| || ||||||||| |||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  25613879 tcaaatcaagcaggtgaaaaaataattcaaacaaaaataaatagcaagagataatggaggaaggagaacac-aagaatttgtttacctagttcggtct 25613975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 5336700 - 5336786
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaata-aacagcaagagataaaggaagaaggagaacac-aaagaatttgttta 314  Q
    ||||||||||||| |||| |||||||||||||||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5336700 tcaaatcaagtggatgaccatataattcaagcaaaaatttaacagtaagagataaaggaagaaggagaacacaaaagaatttgttta 5336786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 36771655 - 36771559
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  36771655 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacggcaagagataaaaggaagaaggagaacacaa-gaatttgtttacctagttcggtct 36771559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 16631444 - 16631370
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaa--ataaacagcaagagataaaggaagaaggagaacacaa 302  Q
    |||||||||| ||||| |||||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||    
T  16631444 tcaaatcaagcgggtggcaatataattcaagcaaaagcataaacaacaagagataaaggaagaaggataacacaa 16631370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 16688883 - 16688959
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||    
T  16688883 ataatccaaacaaaagtaaacagcaagagataaaaggaagaaagagaacac-aagaatttgtttacccagttcggtct 16688959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 4555983 - 4556077
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    |||||||||| ||||  |||| |||| ||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||    
T  4555983 tcaaatcaagcgggtagcaat-taatccaaacaaaagtaaacagcaagagataaaaggaagaaagagaacac-aagaatttgtttacccagttcggt 4556077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 4558569 - 4558473
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||||| ||||||||||||| ||||||| ||| ||||||| | ||||||||||||| ||||||||||    
T  4558569 tcaaatcaagcgggtatcaa-ataattcaaacaaaaattaacagcaagagataaaaggaaaaagaagaacac-atgaatttgtttacccagttcggtct 4558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 16639087 - 16638990
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaa-taaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||  | ||||||||| |||||||||| |||||||||||||||||||||| ||||| | ||| ||| ||||||||||| ||||| ||||    
T  16639087 tcaaatcaagcggaaggcaatataatccaagcaaaaaataaacagcaagagataaaggaataaggatatcac-aaggatttgtttacccagttcagtct 16638990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 36769738 - 36769642
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||||||||  ||| ||||||||| |||||  ||||  ||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||    
T  36769738 tcaaatcaagtgggtagcaa-ataattcaaacaaaagcaaacgacaagagataaaaggaagaaggagaacac-aagaatttgtttatccagttcggtct 36769642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 31300662 - 31300586
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||| |||||||| || |||||||||||| ||||||||||    
T  31300662 ataatccaaacaaaagtaaacagcaagagataaaaggaagaaagagaacac-aataatttgtttacccagttcggtct 31300586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 4570352 - 4570256
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||| | |||||| ||||||||||| |||||||| ||||||||| ||||||||||||  ||||||||||    
T  4570352 tcaaatcaagcgggtagcaa-ataattcaaacaatagtaaacaacaagagataaaaggaagaagaagaacacaa-gaatttgtttacacagttcggtct 4570256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 4885133 - 4885037
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| |||| |||| ||||| ||| ||||  |||| | ||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  4885133 tcaaatcaagcgggtaacaa-ataatccaaacaaaggtaaataacaagagataaaaggaagaaagagaacacaa-gaatttgtttacccagttcggtct 4885037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 7050211 - 7050265
Alignment:
Q  249 atataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaa 302  Q
    ||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||    
T  7050211 atataattcaaacaaaattaaacagcaagagataaaagaaagaaggagaacacaa 7050265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 18587229 - 18587129
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaa--caca-aagaatttgtttacctagttcggt 325  Q
    |||||||||| ||||  ||| ||||||||| ||||||||||||||||||||| |||||||||  |||||   ||| ||||||||||||||| ||||||||    
T  18587229 tcaaatcaagcgggtagcaa-ataattcaaacaaaaataaacagcaagagataaaaggaagagagagaaagaacacaagaatttgtttacccagttcggt 18587131  T
Q  326 ct 327  Q
    ||    
T  18587130 ct 18587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 47566731 - 47566666
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacc 316  Q
    ||||||||| |||||  ||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  47566731 ataattcaaacaaaagaaaacaacaagagataaaaggaagaaggagaactc-aagaatttgtttacc 47566666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 17066111 - 17066015
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || ||| |||||| | ||||||||||    
T  17066111 tcaaatcaagctggtgacaatataattcaaacaaaaataaacagcaagagataaaggaagaaggagaac-ccaataatctgtttatccagttcggtct 17066015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 26643413 - 26643339
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagata-aaggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    ||||||||| ||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  26643413 ataattcaaacaaaagtaaacagtaagagatagaaggaagaaggagaacacaa-gaatttgtttacccagttcggt 26643339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 26749379 - 26749305
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagata-aaggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    ||||||||| ||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  26749379 ataattcaaacaaaagtaaacagtaagagatagaaggaagaaggagaacacaa-gaatttgtttacccagttcggt 26749305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 13467411 - 13467486
Alignment:
Q  254 attcaagcaaaaataaacagcaagagataaa---ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||| ||||| ||||||| ||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  13467411 attcaaacaaaagtaaacagtaagagataaaaaaggaagaaggagaacacaa-gaatttgtttacctagttcggtct 13467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 12166068 - 12166165
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaagg--aagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||| |||||  ||||||||||| |  |||||||||||||||| ||||||||||||| ||||||||||    
T  12166068 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacgacaagagataaaaggaaagaaggagaacacaa-gaatttgtttacccagttcggtct 12166165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 25941931 - 25941832
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataa----aggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    |||||||||| ||||  ||| ||||| ||| |||||||||||||||||||||||    | ||||||| ||||||| ||||||||||||||| ||||||||    
T  25941931 tcaaatcaagcgggtagcaa-ataatccaaacaaaaataaacagcaagagataaaaggaagaagaagaagaacac-aagaatttgtttacccagttcggt 25941834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 33216048 - 33215990
Alignment:
Q  269 aacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  33216048 aacagcaagagataaacggaagaaagagaacacaa-gaatttgtttacccagttcggtct 33215990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 19701846 - 19701898
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaa 302  Q
    ||||||||| ||||| |||||| |||||||| |||||||||| ||||||||||    
T  19701846 ataattcaaacaaaagtaaacaacaagagataaaaggaagaaagagaacacaa 19701898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 22342751 - 22342820
Alignment:
Q  261 caaaaataaacagcaagagataaa-ggaagaagg---agaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| |||||||||||||||||| ||||||||    ||||||||| ||||||||||||| ||||||||||    
T  22342751 caaaagtaaacagcaagagataaaaggaagaagatgaagaacacaa-gaatttgtttacccagttcggtct 22342820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 13893721 - 13893630
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcg 323  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||    
T  13893721 tcaaatcaagcgggtgacaatataattcaaacaaaa-taaacagcaggagataaaggaagaaggagaacac-aagaatatgtttacccagttcg 13893630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 47878094 - 47878190
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||||||||  ||| ||||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||    
T  47878094 tcaaatcaagtgggtagcaa-ataattcaaacaaaagtaaacagcaagagataaaaggaagaatgagaacac-aagaatttgtttacccagttcggtct 47878190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 11079777 - 11079690
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttaccta 318  Q
    |||||||||||||||  ||| ||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  11079777 tcaaatcaagtgggtagcaa-ataattcaaacaaaagtaaacagcaagagataaaaggaagaaggagaacac-aagaatttgtttaccta 11079690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 7418320 - 7418226
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||||||| ||| ||||| |||||||||||||||||| |||||  | |||||||||||| ||| ||||||||||| ||||||||||    
T  7418320 tcaaatcaagcgggtgacaaaatatttcaaacaaaaataaacagcaagatataaa--aggaaggagaacac-aaggatttgtttacccagttcggtct 7418226  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 27761909 - 27762005
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||    
T  27761909 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacagcaagagataaaaggaagaagaagaacac-aagaatttgtttacccagttcggtct 27762005  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 48390223 - 48390319
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa---ggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    |||||||||  |||| |||| ||||||||| |||||| |||||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||||    
T  48390223 tcaaatcaaacgggtaacaa-ataattcaaacaaaaacaaacagcaagagataaaaagggaagaaggagaacac-aagaatttgtttacccagttcggt 48390319  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 15823582 - 15823625
Alignment:
Q  237 aagtgggtgacaatataattcaagcaaaaataaacagcaagaga 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15823582 aagtgggtgacaatataattcaagcaaaaataaacagcaagaga 15823625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 3330131 - 3330055
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||| |||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||    
T  3330131 ataactcaaacaaaagtaaacagcaagagataaaaggaagaaggagaacac-aagaatttgtgtacccagttcggtct 3330055  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 20031260 - 20031334
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    ||||| ||| ||||||  |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  20031260 ataatccaaacaaaaacgaacagcaagagataaaaggaagaaggagaacac-aagaatttgtttacccagttcggt 20031334  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 10949203 - 10949279
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| ||||||  ||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||| ||||    
T  10949203 ataattcaaacaaaaactaacagcaagagataaaaggaagaaggagaacac-aagaatttgtttatccagttcagtct 10949279  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 10897267 - 10897168
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataa----aggaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    |||||||||| ||||  ||| ||||| ||| |||||||||||||||||||||||    | ||||||| ||||||| ||||||||||||||| ||||||||    
T  10897267 tcaaatcaagcgggtagcaa-ataatccaaacaaaaataaacagcaagagataaaaggaagaagaagaagaacac-aagaatttgtttacccagttcggt 10897170  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 4535836 - 4535778
Alignment:
Q  269 aacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  4535836 aacagcaagagataaaaggaagaaagagaacacaa-gaatttgtttacccagttcggtct 4535778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 38003098 - 38003032
Alignment:
Q  261 caaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||    
T  38003098 caaaagtaaacaacaagagataaaaggaagaaggagaacac-aagaatttgtttacgcagttcggtct 38003032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 47882806 - 47882897
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcg 323  Q
    |||||||||||||||   || ||||||||| ||||| ||||||||||||||| |||| ||||||| |||||| ||||||||||||||| ||||||    
T  47882806 tcaaatcaagtgggtagtaa-ataattcaaacaaaagtaaacagcaagagataaaagaaagaagg-gaacac-aagaatttgtttacccagttcg 47882897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 46966577 - 46966619
Alignment:
Q  238 agtgggtgacaatataattcaagcaaaaataaacagcaagaga 280  Q
    |||||||||||||||||||||| |||||||||| || ||||||    
T  46966577 agtgggtgacaatataattcaaacaaaaataaatagtaagaga 46966619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 28458751 - 28458847
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||| |||| |||||    
T  28458751 tcaaatcaagcgagtgacaaaataattcaagcaaaaataaacagcaagggataaaggacgaaggagaacac-aagaaattgtttacccagtttggtct 28458847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 38191240 - 38191175
Alignment:
Q  262 aaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  38191240 aaaaacaaacagcaagagataaaaggaagaaggagaacacaa-gaatttgtttacccagttcggtct 38191175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 37170676 - 37170763
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttaccta 318  Q
    |||||||||||||||   || ||||||||| ||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  37170676 tcaaatcaagtgggtagtaa-ataattcaaacaaaagtaaacagcaagagataaaaggaagaaggagaacac-aataatttgtttaccta 37170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 30479256 - 30479157
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaa--agaatttgtttacctagttcggtc 326  Q
    |||||||||||||||  ||| ||||| ||| |||||||||||||||||||||||| |||||||| |||| |  |  |||||||||||||| |||||||||    
T  30479256 tcaaatcaagtgggtagcaa-ataatccaaacaaaaataaacagcaagagataaaaggaagaagaagaagaatacaagaatttgtttacccagttcggtc 30479158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 27517559 - 27517658
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaag----gaagaaggagaacacaaagaatttgtttacctagttcggt 325  Q
    |||||||||| ||||  ||| ||||| ||| |||||||||||| ||||||||||||    ||||||| ||||||| ||||||||||||||| ||||||||    
T  27517559 tcaaatcaagcgggtagcaa-ataatccaaacaaaaataaacaacaagagataaagggaagaagaagaagaacac-aagaatttgtttaccaagttcggt 27517656  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 21369902 - 21369806
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtc 326  Q
    |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||| |||||||| |||||  || ||||||||| |||||||||    
T  21369902 tcaaatcaagcgggtgacaaaataattcaaataaaaataaacagcaagagataaaggatgaaggagaccacaagaaaattgtttacccagttcggtc 21369806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 44010693 - 44010769
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||    
T  44010693 ataattcaaacaaaagtaaacagcaagagataaaaggaagaaggagaacac-aataatttgtttaccaagttcggtct 44010769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 44016584 - 44016680
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||||||| |  ||| |||||| || ||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  44016584 tcaaatcaagtggatagcaa-ataattaaaacaaaagtaaacaacaagagataaaaggaagaaggagaacac-aagaatttgtttacccaattcggtct 44016680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 44143790 - 44143886
Alignment:
Q  230 tcaaatcaagtgggtgacaatataattcaagcaaaaataaacagcaagagat-aaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||| ||||  ||| ||||||||| ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||| | | ||||||||    
T  44143790 tcaaatcaagcgggtagcaa-ataattcaaacaaaagtaaacagcaagagataaaaggaagaaggagaacgc-aagaatttgtttatccaattcggtct 44143886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 2075331 - 2075278
Alignment:
Q  272 agcaagagataaaggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||    
T  2075331 agcaagagataa-ggaggaaggagaacacaa-gaatttgtttacccagttcggtct 2075278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 34546820 - 34546899
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagataa----aggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| ||| ||||||||||||||||||| |||    | ||||||| ||||||| ||||||||||||||| ||||||||||    
T  34546820 ataatccaaacaaaaataaacagcaagaggtaaaaggaagaagaagaagaacac-aagaatttgtttacccagttcggtct 34546899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 42006902 - 42006826
Alignment:
Q  251 ataattcaagcaaaaataaacagcaagagataaa-ggaagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||||||| ||||| ||||||| |||| ||||| ||||||||||||| |||  ||||||||||||  ||||||||||    
T  42006902 ataattcaaacaaaagtaaacagtaagaaataaaaggaagaaggagaatacat-gaatttgtttacgcagttcggtct 42006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 44512476 - 44512545
Alignment:
Q  261 caaaaataaacagcaagagataaa-ggaagaaggagaaca-ca-aagaatttgtttacctagttcggtct 327  Q
    ||||| |||||||||||||||||| |||||||| |||| | || ||||||||||||||| ||||||||||    
T  44512476 caaaagtaaacagcaagagataaaaggaagaagaagaataacacaagaatttgtttacccagttcggtct 44512545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 7464470 - 7464538
Alignment:
Q  262 aaaaataaacagcaagagataaagg----aagaaggagaacacaaagaatttgtttacctagttcggtct 327  Q
    ||||| ||||||||||||||||| |    |||||| ||||||||| ||||||||||||| ||||||||||    
T  7464470 aaaaaaaaacagcaagagataaaaggaagaagaagaagaacacaa-gaatttgtttacccagttcggtct 7464538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 45366844 - 45366804
Alignment:
Q  232 aaatcaagtgggtgacaatataattcaagcaaaaataaaca 272  Q
    |||||||| || ||||||||||||||||||||| |||||||    
T  45366844 aaatcaagcggctgacaatataattcaagcaaatataaaca 45366804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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