View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8560_low_22 (Length: 297)
Name: NF8560_low_22
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_22 |
 | |
|
| [»] scaffold0331 (1 HSPs) |
| | |
|
| [»] scaffold0055 (1 HSPs) |
| | |
|
| [»] scaffold0052 (1 HSPs) |
| | |
|
| [»] scaffold0320 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 48009614 - 48009339
Alignment:
| Q |
1 |
agaaaaaactaaacttgagcattattaaacatagacccagcaataaaaatgaaaactgttgcaaaaataagcatcgacccagcaataaaaataagaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
48009614 |
agaaaaaactaaacttgagcattattaaacatagacccaacaataaaaatgaaaactgttgcaataataagcatcgacccaataataaaaataagaactt |
48009515 |
T |
|
| Q |
101 |
gagcactattaagcagaaacccagtatgaaaatcgtaaagtagagcaataataagctgaaaccaaataagaaaaaggaaaagctggaaattattgaggtt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| || | |||||||||||| |
|
|
| T |
48009514 |
gagcactattaagcagaaaccaagtatgaaaatcgtaaactagagcaataataagcagaaacccaataagaaaaatgaaaaggtgaagattattgaggtt |
48009415 |
T |
|
| Q |
201 |
caaatgctaaccgtagctctgagaaacgtgggtcgtgatgaatagaaggaaacgaaagcgagaaccctagaatgaa |
276 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
48009414 |
caaatgctaaccatagctctgaaaaacgtgggtcgtgatgaatagaaggaaaggaaagtgagaaccccagaatgaa |
48009339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 688 - 521
Alignment:
| Q |
1 |
agaaaaaactaaacttgagcattattaaacatagacccagcaataaaaatgaaaactgttgcaaaaataagcatcgacccagcaataaaaataagaactt |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| || ||| || |||||| |
|
|
| T |
688 |
agaaaaacctaaacttgatcattattaaacatagacccagcaataaaa-tgaaaactattgcaaaaataagcatcgacacagtaagaaaggtatgaactt |
590 |
T |
|
| Q |
101 |
gagcactattaagcagaaacccagtatgaaaatcgtaaagtagagcaataataagctgaaaccaaataa |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
589 |
gagcactattaagcagaaacccagtatgaaaatcgtaaagtagagcactaataagcagaaacccaataa |
521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 276
Target Start/End: Original strand, 7205940 - 7206180
Alignment:
| Q |
25 |
ttaaacatagacccagcaataaaaatgaaaactgttgcaaaaataagcatcgacccagcaataaaaataagaacttgagcactattaagcagaaacccag |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||||| |||||||||||| |||| || | ||||| | |||||||||||||||||||||||||||| |
|
|
| T |
7205940 |
ttaaacataaacccagcaataaaaatgaaaagtattgcaataataagcatcgatccagtaagacaaatatgtacttgagcactattaagcagaaacccag |
7206039 |
T |
|
| Q |
125 |
tatgaaaatcgtaaagtagagcaataataagctgaaaccaaataagaaaaaggaaaagctggaaattattgaggttcaaatgctaaccgtagctctgaga |
224 |
Q |
| |
|
||| ||||| ||||||||||||||| | ||| |||||| ||||||||||| ||||| || | |||||| |||||||||||| || ||| ||| |
|
|
| T |
7206040 |
tataaaaattgtaaagtagagcaat-tttagcagaaacctaataagaaaaattaaaagttgaagcttattg------aaatgctaaccgcagttctcaga |
7206132 |
T |
|
| Q |
225 |
aacgtgggtcgtgatgaatagaaggaaacgaaagcgagaaccctagaatgaa |
276 |
Q |
| |
|
||| || ||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7206133 |
----tggatcatgacgaatagaaggaaacgaaagtgagaaccctagaatgaa |
7206180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 28121448 - 28121266
Alignment:
| Q |
97 |
acttgagcactattaagcagaaacccagtatgaaaatcgtaaagtagagcaataataagctgaaaccaaataagaaaaaggaaaagctggaaattattga |
196 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||| | |||| | || || | ||||| | ||| | |||||||||||||||| || | |||||||| |
|
|
| T |
28121448 |
acttgaacattattaagcagaaacccagtaataaaaacctaaacttgaacataattaagcatagacccagtaagaaaaaggaaaagttgaagattattga |
28121349 |
T |
|
| Q |
197 |
ggttcaaatgctaaccgtagctctg---agaaacgtgggtcgtgatgaatagaaggaaacgaaagcgagaaccctagaatgaa |
276 |
Q |
| |
|
|||| ||| ||| |||||||||||| | ||| ||||||||||| |||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
28121348 |
ggttgaaaggctcaccgtagctctgacaaaaaaggtgggtcgtgaggaatgaaaggaaatggaagtaggaaccctagaatgaa |
28121266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 40 - 76
Alignment:
| Q |
240 |
gaatagaaggaaacgaaagcgagaaccctagaatgaa |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40 |
gaatagaaggaaacgaaagtgagaaccctagaatgaa |
76 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 84495 - 84459
Alignment:
| Q |
240 |
gaatagaaggaaacgaaagcgagaaccctagaatgaa |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
84495 |
gaatagaaggaaacgaaagtgagaaccctagaatgaa |
84459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 16884 - 16831
Alignment:
| Q |
108 |
attaagcagaaacccagtatgaaaatcgtaaagtagagcaataataagctgaaa |
161 |
Q |
| |
|
|||||||| | |||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
16884 |
attaagcatagacccagtaagaaaaatgtaaagtagagcaataataagcagaaa |
16831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University