View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_26 (Length: 286)
Name: NF8560_low_26
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 47426718 - 47426458
Alignment:
| Q |
10 |
gacatcaacattggtgtatgaaggattgttttgtggagcatctcatcaatgctatctagacctccatttgtaaaacacatgaaaataaaatcctgaaatt |
109 |
Q |
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| T |
47426718 |
gacatcaacattggtgtatgaaggattgttttgtggagcatctcatcaatgctatcttgacctccatttgtaaaacacatgaaaataaaatcctgaaatt |
47426619 |
T |
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| Q |
110 |
cccaggttgtttacagaagtgcacaagaaacaaagtggcaaatgaagtcatagagcttgctagctagctagggtctcaatcc-aaataatttccagtcag |
208 |
Q |
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| T |
47426618 |
-ccaggttgtttacagaagtgcacaagaaacaaagtggcaaatgaagtcatagagcttgctagctagctagggtctcaatccaaaataatttccagtcag |
47426520 |
T |
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| Q |
209 |
catgtaaacggatagcacgtgtgtataccattggccaattagaatatgccatgtggcacacc |
270 |
Q |
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| T |
47426519 |
cttgtgaacggatagcacttgtgtataccattgcccaattagaatgtaccatgtggcacacc |
47426458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 50434147 - 50434097
Alignment:
| Q |
117 |
tgtttacagaagtgcacaagaaacaaagtggcaaatgaagtcatagagctt |
167 |
Q |
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| T |
50434147 |
tgtttaaagaagtgcacaagaaacagagtagcaaatgaagtcatagagctt |
50434097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 41179588 - 41179624
Alignment:
| Q |
232 |
tataccattggccaattagaatatgccatgtggcaca |
268 |
Q |
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| T |
41179588 |
tataccattgcccaattagaatgtgccatgtggcaca |
41179624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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