View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_low_29 (Length: 272)

Name: NF8560_low_29
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_low_29
NF8560_low_29
[»] chr5 (3 HSPs)
chr5 (18-248)||(35431252-35431488)
chr5 (18-171)||(35379186-35379342)
chr5 (18-96)||(35418821-35418899)
[»] chr1 (3 HSPs)
chr1 (196-248)||(50900589-50900641)
chr1 (87-137)||(10418968-10419018)
chr1 (26-148)||(14486291-14486413)
[»] chr4 (1 HSPs)
chr4 (197-254)||(2442491-2442549)
[»] scaffold0667 (1 HSPs)
scaffold0667 (194-254)||(2672-2733)
[»] chr6 (1 HSPs)
chr6 (195-248)||(9880567-9880620)
[»] chr3 (1 HSPs)
chr3 (195-248)||(29594791-29594844)
[»] chr7 (1 HSPs)
chr7 (196-252)||(12142077-12142133)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 35431252 - 35431488
Alignment:
Q  18 tttatttgattttaaatttgaaaatttgtgtatttatgacatgttatttaatgggagagtaactattaccattttcttttcaattatttccgtgaaagga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35431252 tttatttgattttaaatttgaaaatttgtgtatttatgacatgttatttaatgggagagtaactattaccattttcttttcaattatttccgtgaaagga 35431351  T
Q  118 acaagcaattgtttgcataaaatatggaattgtatcattgtgagaaaacta-------aatggaagaatttggcaactaaataatgggaaaattacactg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||     
T  35431352 acaagcaattgtttgcataaaatatggaattgtatcattgtgagaaaactaatgcaacaatggaagaatttggcaactaaataatgggaaaattacact- 35431450  T
Q  211 atctcccttgagttatctttaaatgacacaaacacccc 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35431451 atctcccttgagttatctttaaatgacacaaacacccc 35431488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 35379186 - 35379342
Alignment:
Q  18 tttatttgattttaaatttgaaaatttgtgtattt-atgacatgttatttaatgggag-agtaactattaccattttcttttcaattatttccgtgaaa- 114  Q
    ||||||||||||||||||||||||||||||||||| ||   || ||||||||||| || |||| ||||| |||||||||||||||||||||||||||||     
T  35379186 tttatttgattttaaatttgaaaatttgtgtattttatttgattttatttaatggcaggagtatctattgccattttcttttcaattatttccgtgaaaa 35379285  T
Q  115 ggaacaagcaattgtttgcataaaatatggaattgtatcattgtgagaaaactaaat 171  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||    
T  35379286 ggaacaagcaattgtttgcataaagtatggaattctatcattgtgggaaaattaaat 35379342  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 35418821 - 35418899
Alignment:
Q  18 tttatttgattttaaatttgaaaatttgtgtatttatgacatgttatttaatgggagagtaactattaccattttcttt 96  Q
    ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||| ||||| |||||||| ||||| |||||    
T  35418821 tttatttgagtttaaatttgaaagtttgtatatttatggcatgttatttaataggagaataactatttccattgtcttt 35418899  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 50900641 - 50900589
Alignment:
Q  196 gggaaaattacactgatctcccttgagttatctttaaatgacacaaacacccc 248  Q
    ||||||| |||||| || ||||||||||| |||||||||| ||||||||||||    
T  50900641 gggaaaactacactcatttcccttgagttttctttaaatgtcacaaacacccc 50900589  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 10419018 - 10418968
Alignment:
Q  87 cattttcttttcaattatttccgtgaaaggaacaagcaattgtttgcataa 137  Q
    |||| ||||||||||||| |||||||| |||| ||| ||||||||||||||    
T  10419018 cattgtcttttcaattatctccgtgaatggaagaagaaattgtttgcataa 10418968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 14486291 - 14486413
Alignment:
Q  26 attttaaatttgaaaatttgtgtatttatgacatgttatttaatgggagagtaactattaccattttcttttcaattatttccgtgaaaggaacaagcaa 125  Q
    ||||| ||||||||||||||||| |||| | |||  |||||||| ||||||| |||  |  | || || |||| |||||||||||||| | ||||||||     
T  14486291 attttgaatttgaaaatttgtgtttttaggtcattctatttaataggagagtgactgctttcgttgtcctttctattatttccgtgaatgcaacaagcat 14486390  T
Q  126 ttgtttgcataaaatatggaatt 148  Q
     | |||||||||||  |||||||    
T  14486391 gtttttgcataaaacgtggaatt 14486413  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 2442491 - 2442549
Alignment:
Q  197 ggaaaattacactgatctcccttgagttatctttaaatgacacaaaca-cccctctagt 254  Q
    ||||||||||||||| ||||| |||| | |||||||| |||||||||| ||||||||||    
T  2442491 ggaaaattacactgacctcccctgaggtctctttaaacgacacaaacatcccctctagt 2442549  T

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Target: scaffold0667 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 2672 - 2733
Alignment:
Q  194 atgggaaaattacactgatctcccttgagttatctttaaatgacacaaacacc-cctctagt 254  Q
    |||||||||||||||| | ||| || ||| |||| |||||||||||||||||| ||||||||    
T  2672 atgggaaaattacactcacctcgctcgaggtatccttaaatgacacaaacaccacctctagt 2733  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 9880567 - 9880620
Alignment:
Q  195 tgggaaaattacactgatctcccttgagttatctttaaatgacacaaacacccc 248  Q
    ||||||||||||||| | |||||||||||| ||||||||| ||| | |||||||    
T  9880567 tgggaaaattacactcacctcccttgagttttctttaaataacaaagacacccc 9880620  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 29594791 - 29594844
Alignment:
Q  195 tgggaaaattacactgatctcccttgagttatctttaaatgacacaaacacccc 248  Q
    |||||||| |||| | |||||||||||| | ||||||||||||||| |||||||    
T  29594791 tgggaaaaatacattcatctcccttgaggtctctttaaatgacacagacacccc 29594844  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 12142133 - 12142077
Alignment:
Q  196 gggaaaattacactgatctcccttgagttatctttaaatgacacaaacacccctcta 252  Q
    ||||||| |||||| |||||||||||| | |||||||||||| |  |||||||||||    
T  12142133 gggaaaaatacactcatctcccttgaggtctctttaaatgacgccgacacccctcta 12142077  T

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