View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_3 (Length: 548)
Name: NF8560_low_3
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 6286097 - 6286577
Alignment:
| Q |
1 |
ataagaacacctacatctcattaatttcgtttcccttatccactcaatttcttgaaagttagtttatttatgggatgacgtaatgattaagaccaagtat |
100 |
Q |
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| T |
6286097 |
ataagaacacctacatctcatcaatttcgtttcccttatccactcaatttcttgaaagttagtttatctatgggatgacgtaatgattaagaccaagtat |
6286196 |
T |
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| Q |
101 |
ttttgctttcttaaatttatgaatggctcaaatagttcaatcattgtatacatacacaccaatttggtttgcttgtataagttgtactgttcaaatacc- |
199 |
Q |
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| T |
6286197 |
ttttgctttcttaaatttatgaatggctcaaatagttcaatcattgtatacatacacaccaatttggtttgcttgtataagttgtactgttcaaatacca |
6286296 |
T |
|
| Q |
200 |
--ataatataatgtatatttttaatgtaaaaaagctcctacgtacatgacaaatctcatgcccnnnnnnnngtacaacgtaactcagaaatttcaccctc |
297 |
Q |
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| T |
6286297 |
taataatataatgtatatttttaatgtaataaagctcctacgtacatgacaaatctcatgcccaaaaaaaagtacaacgtaactcagaaatttcaccctc |
6286396 |
T |
|
| Q |
298 |
ctttaggtgtgaacatttagatcatcgtgttggccagagaagcacgtgtaccaaattaaaagcagcctttggttggtaaatttggcaaaataaaacagca |
397 |
Q |
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| T |
6286397 |
ctttaggtgtgaacatttagatcatcgtgttggccagagaagcacatgtaccaaattaaaagcagcctttggttggtaaatttggcaaaataaaacagca |
6286496 |
T |
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| Q |
398 |
agaagaagcagtctttgctggtggataaggaattgttttatgtgtacggtaaacatcaatttaggctaacttgtttataga |
478 |
Q |
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| T |
6286497 |
agaagaagcagtctttgctggtggataaggaattgttttatgtgtacggtaaacatcaatttaggctaacttgtttataga |
6286577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 6286591 - 6286628
Alignment:
| Q |
476 |
agataagataattaggtttttattccttctaggttagt |
513 |
Q |
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| T |
6286591 |
agataagataattaggtttttattccttctaggttagt |
6286628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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