View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8560_low_31 (Length: 269)
Name: NF8560_low_31
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 28457869 - 28457631
Alignment:
| Q |
18 |
gttacaagccaacaggtacctcgttttatacattttcaggttcattggttatacagatgaatgcatacaatatctagccnnnnnnnnnaccctatgttgt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
28457869 |
gttacaagccaacaggtagctcgttttatacattttcaggttcattggttatacagatgaatgcatacaatatctggccattttttttacc-tatgttgt |
28457771 |
T |
|
| Q |
118 |
tggctgttacaggctaccaaatggagagaacagaaggcactacacgaccttaaatctctttttccaaaagaggtaagcacaagctgacatcactcttgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28457770 |
tggctgttacaggctaccaaatggagagaacagaaggcactacacgaccttaaatctctttttccaaaagaggtaagcacaagctgacttcactcttgtt |
28457671 |
T |
|
| Q |
218 |
ttgtatttcgtaatattttcatgcaagaattatctaccca |
257 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
28457670 |
ttatatttcgtaatattttcatgcaagagttatcttccca |
28457631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University