View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_32 (Length: 266)
Name: NF8560_low_32
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 39457439 - 39457193
Alignment:
| Q |
6 |
gcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaactcctaaataaataaaagtttgatgaaactatgattttcgtactatatat |
105 |
Q |
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| T |
39457439 |
gcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaactcctaaataaataaaagtttgatgaaactatgattttcgtactatatat |
39457340 |
T |
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| Q |
106 |
gcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatgttacatgcaatttcccatgtttgagagtctgactcacttggagcttagct |
205 |
Q |
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| T |
39457339 |
gcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatgttacatgcaatttcccatgtttgagagtctgactcacttggagcttagct |
39457240 |
T |
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| Q |
206 |
ttaattctgaagtttataatccgaagtggaagtggttgatgagaatg |
252 |
Q |
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| T |
39457239 |
ttaattctgaagtttataatccgaagtggaagtggttgatgagaatg |
39457193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 39437922 - 39438026
Alignment:
| Q |
107 |
catatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatgttacatgcaatttcccatgtttgagagtctgactcacttggagcttagctt |
206 |
Q |
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| T |
39437922 |
catatttaatgttatgtcttgtgtaactcttgcagtggatgttcacatattgcatgcaacttcccatgtttgagagtctgattcacttggagcttagctt |
39438021 |
T |
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| Q |
207 |
taatt |
211 |
Q |
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|||| |
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| T |
39438022 |
aaatt |
39438026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 39424907 - 39425047
Alignment:
| Q |
112 |
ttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatgttacatgcaatttcccatgtttgagagtctgactcacttggagcttagctttaatt |
211 |
Q |
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| T |
39424907 |
ttaatgttgtgtcttgtgtgactcatgaagcctatgttcacaaattgcaagcaccttcccatgtttgagagtctgacttacttgaagcttagcctatctt |
39425006 |
T |
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| Q |
212 |
ctgaagtttataatccgaagtggaagtggttgatgagaatg |
252 |
Q |
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| T |
39425007 |
ttaaagtttggtatccgaagtggaagtggttgatgagaatg |
39425047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 39462856 - 39462812
Alignment:
| Q |
113 |
taatgttgtgtcttgtgtaactcatgcagtggatgctcccatgtt |
157 |
Q |
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| T |
39462856 |
taatgttgtgtcttgtgtaactcattcagtggacactcccatgtt |
39462812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 14350111 - 14350070
Alignment:
| Q |
167 |
ttcccatgtttgagagtctgactcacttggagcttagcttta |
208 |
Q |
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| T |
14350111 |
ttcccatgtttcagagtctgacttacttggagcttaacttta |
14350070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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