View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_low_33 (Length: 264)

Name: NF8560_low_33
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_low_33
NF8560_low_33
[»] chr4 (23 HSPs)
chr4 (16-264)||(5106479-5106730)
chr4 (53-251)||(5102270-5102468)
chr4 (57-252)||(2467218-2467413)
chr4 (59-111)||(2367981-2368033)
chr4 (60-111)||(2373547-2373598)
chr4 (57-111)||(2518909-2518963)
chr4 (60-109)||(12124524-12124573)
chr4 (58-184)||(2621411-2621534)
chr4 (57-255)||(2525431-2525626)
chr4 (57-111)||(2533989-2534043)
chr4 (60-111)||(5035301-5035352)
chr4 (57-111)||(2490804-2490858)
chr4 (58-102)||(2363162-2363206)
chr4 (58-110)||(2547221-2547273)
chr4 (57-112)||(2460282-2460337)
chr4 (57-216)||(2477259-2477418)
chr4 (62-117)||(2546825-2546880)
chr4 (58-112)||(2471733-2471787)
chr4 (58-99)||(2625589-2625630)
chr4 (60-109)||(12126580-12126629)
chr4 (58-110)||(2393911-2393963)
chr4 (60-99)||(2391349-2391388)
chr4 (132-243)||(2518981-2519092)
[»] chr7 (1 HSPs)
chr7 (197-252)||(2576568-2576623)
[»] chr8 (2 HSPs)
chr8 (59-104)||(18314718-18314763)
chr8 (58-102)||(18318725-18318769)
[»] chr5 (3 HSPs)
chr5 (59-103)||(28673354-28673398)
chr5 (59-104)||(28695603-28695648)
chr5 (60-111)||(39253182-39253233)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 5106730 - 5106479
Alignment:
Q  16 catcatcgtgataataacgggga---taaccgtttcccgaaagcatgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtc 112  Q
    ||||||| ||||||||||| |||   ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5106730 catcatcatgataataacgaggaggataaccctttctcgaaagcatgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtc 5106631  T
Q  113 tacacccgaagcaattcggtaacaagtgatagatgtcaaatttttcacctttagggagaaagctcgcaacccgtttttaggaaacttaatggggtggtag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5106630 tacacccgaagcaattcggtaacaagtgatagatgtcaaatttttcatctttagggagaaagctcgcaacccaattttaggaaacttaatggggtggtag 5106531  T
Q  213 agagtgagcaatttgatgtttaaagggaaagcagagatttggtcgagaagct 264  Q
    |||| |||||||||||| |||||||||||||||||||||||||  |||||||    
T  5106530 agagcgagcaatttgatatttaaagggaaagcagagatttggtacagaagct 5106479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 5102468 - 5102270
Alignment:
Q  53 aagcatgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaa 152  Q
    |||||||||||| ||||| ||||| || |||||||||| ||||||||| | ||||| || |||  |||||||||||||||||||||||||||||||||||    
T  5102468 aagcatgagttcgtcgagaaaaggaaaccaatcagcaaagaagaagaggtgactctggtatacctccgaagcaattcggtaacaagtgatagatgtcaaa 5102369  T
Q  153 tttttcacctttagggagaaagctcgcaacccgtttttaggaaacttaatggggtggtagagagtgagcaatttgatgtttaaagggaaagcagagatt 251  Q
    ||||||| |||| ||||||| ||||||||||| ||| |||||| |||||||||||||||||||| |||| |||||||||||||||  |||| |||||||    
T  5102368 tttttcatcttttgggagaatgctcgcaacccttttgtaggaagcttaatggggtggtagagagcgagcgatttgatgtttaaagtcaaagtagagatt 5102270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 252
Target Start/End: Original strand, 2467218 - 2467413
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaatttt 156  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||| | | |  |||||||||||||||||||||  |||||||||||||    
T  2467218 atgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaatttt 2467317  T
Q  157 tcacctttagggagaaagctcgcaacccgtttttaggaaacttaatggggtggtagagagtgagcaatttgatgtttaaagggaaagcagagattt 252  Q
    ||| || |  |||||||||||||||||| | |  ||||| | | ||||||||||||||||||||  |||||| ||  ||||||||||  |||||||    
T  2467318 tcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagattt 2467413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  59 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 2373598 - 2373547
Alignment:
Q  60 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttgt 2373547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 2518909 - 2518963
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  2518909 atgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgt 2518963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 12124524 - 12124573
Alignment:
Q  60 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactctt 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 12124573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 2621534 - 2621411
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaattttt 157  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| |||||   |       |  ||||||||||||||||| |||||||||||||||    
T  2621534 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcgga---ttttattaattcggtaacaagtgagagatgtcaaattttt 2621438  T
Q  158 cacctttagggagaaagctcgcaaccc 184  Q
    ||  |||  ||||||||||||||||||    
T  2621437 catatttttggagaaagctcgcaaccc 2621411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 2525431 - 2525626
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagc-aattcggtaacaagtgatagatgtcaaattt 155  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||| ||||||  | |    || |  | | | |||||||||| |||||||||||||    
T  2525431 atgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaata----aatctcagttgataacaagtgagagatgtcaaattt 2525526  T
Q  156 ttcacctttagggagaaagctcgcaacccgtttttaggaaacttaatggggtggtagagagtgagcaatttgatgtttaaagggaaagcagagatttggt 255  Q
    ||||  ||   ||| ||| | |||||| | |||| ||||| |||   ||||||||||||||||||| |||||| || |||||||||||  ||||||||||    
T  2525527 ttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagatttggt 2525626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 2533989 - 2534043
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  2533989 atgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgt 2534043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 5035301 - 5035352
Alignment:
Q  60 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgt 5035352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 2490804 - 2490858
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||| ||||||    
T  2490804 atgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgt 2490858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 2363206 - 2363162
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagat 102  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  2363206 tgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 2547221 - 2547273
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 110  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||| |||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttg 2547273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 2460282 - 2460337
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtc 112  Q
    ||||||||||||||||| || |||||||||||||| |||||||||| | |||||||    
T  2460282 atgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttgtc 2460337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 2477259 - 2477418
Alignment:
Q  57 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaatttt 156  Q
    ||||||||||| || ||||||||||||| || |||||||||||||||| || |||| |    |||||||| | ||||||  || | |||||| |||||||    
T  2477259 atgagttcttctagcaaagggaaacaattagaaatgaagaagagatcattcctgtcgatcatcgaagcaaattggtaaccggtaaaagatgttaaatttt 2477358  T
Q  157 tcacctttagggagaaagctcgcaacccgtttttaggaaacttaatggggtggtagagag 216  Q
    ||| ||||   || ||||||| |||||| |||  ||||| | |  |||||||||||||||    
T  2477359 tcatcttttttgacaaagctctcaacccatttacaggaaccgtggtggggtggtagagag 2477418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 2546825 - 2546880
Alignment:
Q  62 ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacac 117  Q
    ||||||||||||||| |||||||||||||||||||| | |||| |||||| |||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgtgtacac 2546880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 2471733 - 2471787
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtc 112  Q
    ||||||||||||||||||| ||||||||||| || |||||||||| | |||||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtc 2471787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 2625630 - 2625589
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaaga 99  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  2625630 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 12126580 - 12126629
Alignment:
Q  60 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactctt 109  Q
    |||||||| ||||||||| ||||||| ||||| |||||||||||||||||    
T  12126580 agttcttctagtaaagggcaacaatctgcaataaagaagagatcactctt 12126629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 2393963 - 2393911
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 110  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||| || |||||    
T  2393963 tgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttg 2393911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 2391388 - 2391349
Alignment:
Q  60 agttcttcgagtaaagggaaacaatcagcaatgaagaaga 99  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  2391388 agttcttcgagtaaagggaagcaatcaacaatgaagaaga 2391349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 2518981 - 2519092
Alignment:
Q  132 taacaagtgatagatgtcaaatttttcacctttagggagaaagctcgcaacccgtttttaggaaacttaatggggtggtagagagtgagcaatttgatgt 231  Q
    |||||||||| | |||||||||||||||  ||| | || |||||| ||||||| | ||||||||   | || || ||||||||||||||| || ||| ||    
T  2518981 taacaagtgagatatgtcaaatttttcatgttttgagacaaagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggt 2519080  T
Q  232 ttaaagggaaag 243  Q
     |||||||||||    
T  2519081 ctaaagggaaag 2519092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 2576623 - 2576568
Alignment:
Q  197 cttaatggggtggtagagagtgagcaatttgatgtttaaagggaaagcagagattt 252  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  2576623 cttaatggggtggtagagagcgagcaatttgatgtttaaagggaaaatagagattt 2576568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 18314763 - 18314718
Alignment:
Q  59 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatca 104  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  18314763 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 18318769 - 18318725
Alignment:
Q  58 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagat 102  Q
    |||||||||| || |||||||||||||| ||||||| ||||||||    
T  18318769 tgagttcttcaaggaaagggaaacaatctgcaatgaggaagagat 18318725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  59 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatc 103  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 28695648 - 28695603
Alignment:
Q  59 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatca 104  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||    
T  28695648 gagttcttcgggcaaagggaagcaatcagcaatgaagaagagatca 28695603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 39253233 - 39253182
Alignment:
Q  60 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 111  Q
    |||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||    
T  39253233 agttcttcaagtaaagagaaacaatccgcaatgatgaatagatcactcttgt 39253182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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