View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_37 (Length: 249)
Name: NF8560_low_37
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_37 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 7569528 - 7569327
Alignment:
| Q |
48 |
agtagctcaacaagagtttgtgaatgtctatcaaagctacggaaaaaatgatgacatcttgaccaagtgataatgtttttcataagatttataagtaaat |
147 |
Q |
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| T |
7569528 |
agtagctcaataagagtttgtgaatgtctatcaaagctacggaaaaagtgatgacatcttgaccaagtgataatgtttttcataagatttataagtaaat |
7569429 |
T |
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| Q |
148 |
ttattcaatatcatccatttacacaactttacataatgtaataaatttataaaagggtattgttaacaaagataagaaactaaatctataactatcttta |
247 |
Q |
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| T |
7569428 |
ttattcaatatcatccatttacacaactttacataatgtaataaatttataaaagggtattgttaacaaagataagaaactaaatctataactatcttta |
7569329 |
T |
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| Q |
248 |
at |
249 |
Q |
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|| |
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| T |
7569328 |
at |
7569327 |
T |
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