View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_low_38 (Length: 249)

Name: NF8560_low_38
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_low_38
NF8560_low_38
[»] chr6 (1 HSPs)
chr6 (11-249)||(26842122-26842362)
[»] chr2 (2 HSPs)
chr2 (35-247)||(27638862-27639073)
chr2 (96-135)||(24455817-24455856)
[»] chr5 (1 HSPs)
chr5 (68-249)||(6700897-6701063)
[»] chr1 (3 HSPs)
chr1 (68-235)||(32149917-32150080)
chr1 (96-135)||(50862496-50862535)
chr1 (159-204)||(11475111-11475156)
[»] chr3 (3 HSPs)
chr3 (158-214)||(49926202-49926258)
chr3 (96-135)||(49233942-49233981)
chr3 (96-135)||(49234514-49234553)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 26842362 - 26842122
Alignment:
Q  11 cagagaaagtgagaactattgccattgcacaacagcagccgacaggctagaaacctgctccaaactatgcataaaatccctaaaactcgctccaaattat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26842362 cagagaaagtgagaactattgccattgcacaacagcagccgacaggcctgaaacctgctccaaactaagcataaaatccctaaaactcgctccaaattat 26842263  T
Q  111 gcagaaaattaccttggaccagctccaagttatgc--agnnnnnnnncaaccaagaaaaacacctgattcggtaaaagttcaaactcctataggcaactc 208  Q
    |||||||||||||||||||||||||||||||||||  |         ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26842262 gcagaaaattaccttggaccagctccaagttatgcaaaaaaaaaaaacaaccaagaaaaacacctgattcagtaaaagttcaaactcctataggcaactc 26842163  T
Q  209 aatatagaggatgagttttgagtgaatatatattcttttgc 249  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26842162 aatatagaggatgagttttgagtgaatatatattcttttgc 26842122  T

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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 27638862 - 27639073
Alignment:
Q  35 ttgcacaacagcagccgacaggctagaaacctgctccaaactatgcataaaatccctaaa-actcgctccaaattatgcagaaaattaccttggaccagc 133  Q
    ||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||   ||  | |||||||||||||||| ||| |||||||||||| |||||    
T  27638862 ttgcacaacagcagctgacaagctggaaacctgctacaaactatgcaaaaaaaggcttcacactcgctccaaattattcagtaaattaccttgggccagc 27638961  T
Q  134 tccaagttatgcagnnnnnnnncaaccaagaaaaacacctgattcggtaaaagttcaaactcctataggcaactcaatatagaggatgagttttgagtga 233  Q
    ||||||||||||||        |||||||||||||||||||| ||||||||||||||||||| | ||||||  | ||||||||||||||||||||||| |    
T  27638962 tccaagttatgcagaaaaaa--caaccaagaaaaacacctgaatcggtaaaagttcaaactcttgtaggcagttgaatatagaggatgagttttgagtaa 27639059  T
Q  234 atatatattctttt 247  Q
    ||||||||||||||    
T  27639060 atatatattctttt 27639073  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 24455856 - 24455817
Alignment:
Q  96 ctcgctccaaattatgcagaaaattaccttggaccagctc 135  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  24455856 ctcgctccaaattatgcagaaaattaccttgaaccagctc 24455817  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 6701063 - 6700897
Alignment:
Q  68 ctccaaactatgcataaaatccctaaaactcgctccaaattatgcagaaaattaccttggaccagctccaagttatgcagnnnnnnnncaaccaagaaaa 167  Q
    |||||||||||| | ||||  ||| |||||| ||| ||||||||||||||||||| ||| ||||||||||| |||||| |             |||||||    
T  6701063 ctccaaactatgaaaaaaaaacctcaaactccctctaaattatgcagaaaattacattgaaccagctccaaattatgctg-------------aagaaaa 6700977  T
Q  168 acacctgattcggtaaaagttcaaactcctataggcaactcaatatagaggatgagttttgagtgaatatatattcttttgc 249  Q
    | ||| ||||  ||||||||  ||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||    
T  6700976 ataccagatt--gtaaaagtggaaactcctataggcagctcaatatagaggatgagttttgagcgagtgtatattcttttgc 6700897  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 32150080 - 32149917
Alignment:
Q  68 ctccaaactatgcataaaatccctaaaactcgctccaaattatgcagaaaattaccttggaccagctccaagttatgcagnnnnnnnncaaccaagaaaa 167  Q
    |||||||||||| | ||||||||| || ||| ||||||||||||||||| ||||| ||| ||||||||||| |||||||          ||| |||||||    
T  32150080 ctccaaactatgaa-aaaatccctcaagctccctccaaattatgcagaacattacattgaaccagctccaaattatgca---aaagaaaaacaaagaaaa 32149985  T
Q  168 acacctgattcggtaaaagttcaaactcctataggcaactcaatatagaggatgagttttgagtgaat 235  Q
    ||| | ||||| ||||||||  |||||||| |||  | ||||||||||||||||||||| ||||||||    
T  32149984 acatcagattcagtaaaagtggaaactcctgtagaaagctcaatatagaggatgagtttagagtgaat 32149917  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 50862535 - 50862496
Alignment:
Q  96 ctcgctccaaattatgcagaaaattaccttggaccagctc 135  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  50862535 ctcgctccaaattatgcagaaaactaccttgaaccagctc 50862496  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 11475156 - 11475111
Alignment:
Q  159 ccaagaaaaacacctgattcggtaaaagttcaaactcctataggca 204  Q
    |||| ||||||||| ||||| ||||||| |||||||||||||||||    
T  11475156 ccaaaaaaaacaccagattcagtaaaagctcaaactcctataggca 11475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 49926202 - 49926258
Alignment:
Q  158 accaagaaaaacacctgattcggtaaaagttcaaactcctataggcaactcaatata 214  Q
    ||||||||||||||||||||| || || |||| |||||||||||||| |||||||||    
T  49926202 accaagaaaaacacctgattcagtcaatgttcgaactcctataggcagctcaatata 49926258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 49233942 - 49233981
Alignment:
Q  96 ctcgctccaaattatgcagaaaattaccttggaccagctc 135  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  49233942 ctcgctccaaattatgcagaaaattaccttgaaccagctc 49233981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 49234514 - 49234553
Alignment:
Q  96 ctcgctccaaattatgcagaaaattaccttggaccagctc 135  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  49234514 ctcgctccaaattatgcataaaattaccttgaaccagctc 49234553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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