View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_39 (Length: 249)
Name: NF8560_low_39
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43222027 - 43221786
Alignment:
| Q |
1 |
caatttaagcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtg |
100 |
Q |
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| T |
43222027 |
caatttaagcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtg |
43221928 |
T |
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| Q |
101 |
caattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctga |
200 |
Q |
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| T |
43221927 |
caattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctga |
43221828 |
T |
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| Q |
201 |
tgattgtcaaaaaggaatgaaacttatattgactctctgctt |
242 |
Q |
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| T |
43221827 |
tgattgtcaaaaaggaatgaaacttatattgactctatgctt |
43221786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 43231442 - 43231212
Alignment:
| Q |
4 |
tttaagcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtgcaa |
103 |
Q |
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| T |
43231442 |
tttaaacttggggaaggtgtgatgccagctagtttcaaagtcctgcatgatgccgttaggaaaacagatactcttattgcagattttggcgaaagtgcaa |
43231343 |
T |
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| Q |
104 |
ttggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctgatga |
203 |
Q |
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| T |
43231342 |
tcggaagagttgctcctgttgactctggattctggtggatcattttgcttcgtgcttacacaaaatctacaggggacttaactctgtctgaatctgatag |
43231243 |
T |
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| Q |
204 |
ttgtcaaaaaggaatgaaacttatattgact |
234 |
Q |
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| T |
43231242 |
ttgtcaaaaaggaatgaagcttatattgact |
43231212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 55112614 - 55112520
Alignment:
| Q |
82 |
gcagattttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
176 |
Q |
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| T |
55112614 |
gcagattttggtgaaagtgcaataggcagggttgctcctgttgattctggattttggtggatcatattgcttcgtgcatacacaaaatctacagg |
55112520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 7788528 - 7788433
Alignment:
| Q |
3 |
atttaagcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaag |
98 |
Q |
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||||||||||| |||| ||| |||| |||| ||||| |||||||||| |||| |||||||| ||| |||||||||| ||||||||| ||||| |
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| T |
7788528 |
atttaagcttgtggaagatgtgatgcaagcttgtttcgaagtccttcacgatgacactaggaaaatagacactcttattgaagattttggcgaaag |
7788433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 28863251 - 28863339
Alignment:
| Q |
88 |
tttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
176 |
Q |
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||||||| ||||||||| || || |||||||||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||| |
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| T |
28863251 |
tttggtggaagtgcaataggcagggttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacagg |
28863339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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