View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_low_4 (Length: 465)

Name: NF8560_low_4
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_low_4
NF8560_low_4
[»] chr4 (7 HSPs)
chr4 (13-253)||(32001495-32001732)
chr4 (13-253)||(31942536-31942773)
chr4 (288-447)||(31942351-31942504)
chr4 (288-447)||(32001310-32001463)
chr4 (102-205)||(32004254-32004361)
chr4 (13-103)||(32004565-32004661)
chr4 (360-447)||(32004146-32004236)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 32001732 - 32001495
Alignment:
Q  13 gttacacatcatgcttccatccaaattttcctgatta---ccaccctcaagaacttgaagaacatttgttgaaataggaggggtgttaatattattatca 109  Q
    |||||| |||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001732 gttacatatcatgcttccatccaaattttcctgatgatcaccaccctcaagaacttgaagaacatttgttgaaataggaggggtgttaatattattatca 32001633  T
Q  110 aatccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatgaccatgaccatgac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||    
T  32001632 aatccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatgaccatg------ac 32001539  T
Q  210 caacttctgtgttatgcttagttaaattgaattgtttccatatc 253  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  32001538 caccttctgtgttatgcttagttaaattgaattgtttccatatc 32001495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 31942773 - 31942536
Alignment:
Q  13 gttacacatcatgcttccatccaaattttcctgatta---ccaccctcaagaacttgaagaacatttgttgaaataggaggggtgttaatattattatca 109  Q
    |||||| |||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942773 gttacaaatcatgcttccatccaaattttcctgatgatcaccaccctcaagaacttgaagaacatttgttgaaataggaggggtgttaatattattatca 31942674  T
Q  110 aatccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatgaccatgaccatgac 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||    
T  31942673 aaaccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatgaccatg------ac 31942580  T
Q  210 caacttctgtgttatgcttagttaaattgaattgtttccatatc 253  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  31942579 caccttctgtgttatgcttagttaaattgaattgtttccatatc 31942536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 288 - 447
Target Start/End: Complemental strand, 31942504 - 31942351
Alignment:
Q  288 tattggtgctgttggttaaaggaagtaaagtttgattgaatggttcaatattattgtttgtcataggagcagaaacaggaagaggtaaaggaagcaaggt 387  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||      |||||||||||||||||||    
T  31942504 tattggtgctgttggtaaaaggaagtaaactttgattgaatggttcaatattattgtttgtcataggaacagaaa------gaggtaaaggaagcaaggt 31942411  T
Q  388 tgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcat 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942410 tgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcat 31942351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 288 - 447
Target Start/End: Complemental strand, 32001463 - 32001310
Alignment:
Q  288 tattggtgctgttggttaaaggaagtaaagtttgattgaatggttcaatattattgtttgtcataggagcagaaacaggaagaggtaaaggaagcaaggt 387  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||      |||||||||||||||||||    
T  32001463 tattggtgctgttggtcaaaggaagtaaactttgattgaatggttcaatattattgtttgtcataggaacagaaa------gaggtaaaggaagcaaggt 32001370  T
Q  388 tgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcat 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001369 tgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcat 32001310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 32004361 - 32004254
Alignment:
Q  102 tattatcaaatccaccgcttgctctaaatgcttccaca------gccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatg 195  Q
    |||||||||||||||| | || ||||||||||||||||      ||||||||||||| || |||||||||||||||||||  ||||||||||||||||||    
T  32004361 tattatcaaatccaccacatgatctaaatgcttccacatgtaatgccgccataatataattatcttgctgaaagttcaac--agtgttattgttatcatg 32004264  T
Q  196 accatgacca 205  Q
    | ||||||||    
T  32004263 atcatgacca 32004254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 32004661 - 32004565
Alignment:
Q  13 gttacacatcatgcttccatccaaattttcctgattaccaccctcaag------aacttgaagaacatttgttgaaataggaggggtgttaatatta 103  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||      ||||| ||||| |||||||||||||||||| || |||||||||    
T  32004661 gttacacatcatgcttccatccaaattttcctgatcactaccctcaagaaatttaacttcaagaatatttgttgaaataggaggtgtattaatatta 32004565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 32004236 - 32004146
Alignment:
Q  360 aaacaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaaga---tcatcattggataacatcat 447  Q
    ||||||||||||| | |||||||| ||||||||| || ||||||||||||||||| ||||||||||||   |||||||||||| |||||||    
T  32004236 aaacaggaagaggaagaggaagcagggttgttcccgggaagttcaaagtggatgtaggagattcaagattttcatcattggatgacatcat 32004146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University