View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_41 (Length: 243)
Name: NF8560_low_41
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 40352315 - 40352190
Alignment:
| Q |
75 |
ctcacataaaagcaggtaggtttgtggaccaataattgaataaactgatattggtattgggtaataatgagcttttaccttttcaacagttacccgcttt |
174 |
Q |
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| T |
40352315 |
ctcacatagaagcaggtaggtttgtggaacaataattgaataaactgatattggtattggataataatgagtttttaccttttcaatagttatccacttt |
40352216 |
T |
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| Q |
175 |
taactttgtagtgaagagatatcagc |
200 |
Q |
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| T |
40352215 |
tgactttgtagtgaagagatatcagc |
40352190 |
T |
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