View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_42 (Length: 242)
Name: NF8560_low_42
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_42 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15658656 - 15658433
Alignment:
| Q |
1 |
ttaaaataaaagttccctttggactacgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcagtcataattgtgcaaccccattt |
100 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
15658656 |
ttaaaaaaaaagttccctttggactatgtaccaaaaaattcaatatagttcttctccttctatcagtccaaccatcagtcataattatgcaaccacattt |
15658557 |
T |
|
| Q |
101 |
ctcccaaacagctctgtgtgctgccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagggtggcttaaat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15658556 |
ctcccaaacagctctgtgtgcttccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagagtggcttaaat |
15658457 |
T |
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| Q |
201 |
cctataccatgctttgcaacaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
15658456 |
cctataccatgctttgcaacaagt |
15658433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 244585 - 244365
Alignment:
| Q |
3 |
aaaataaaagttccctttggactacgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcagtcataattgtgcaaccccatttct |
102 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
244585 |
aaaaaaaaagctccctttggactatgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcggtcataattgtgcaaccatatttct |
244486 |
T |
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| Q |
103 |
cccaaacagctctgtgtgctgccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagg--gtggcttaaat |
200 |
Q |
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| T |
244485 |
tccaaacagctctatgtcctgccaaatccttactaatttcaccatataaataatccaaatatttagctctaatctcatgataagagggtgtggcttaaat |
244386 |
T |
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| Q |
201 |
cctataccatgctttgcaaca |
221 |
Q |
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| T |
244385 |
cctataccatgctttgcaaca |
244365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 245908 - 246126
Alignment:
| Q |
3 |
aaaataaaagttccctttggactacgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcagtcataattgtgcaaccccatttct |
102 |
Q |
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|||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
245908 |
aaaaaaaaagttccctttggactatgtaccaaaaagttcaatatagttcttctcctcctatcagtccaaccatcggtcataattgtgcaaccatatttct |
246007 |
T |
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| Q |
103 |
cccaaacagctctgtgtgctgccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagggtggcttaaatcc |
202 |
Q |
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|||||||| |||| ||| ||| ||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
246008 |
cccaaacaactctatgtcctgtcaaatccttactaatttcaccatagaaataatccaaatatttaactctaatctcatgataagagggtggcttaaatat |
246107 |
T |
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| Q |
203 |
tataccatgctttgcaaca |
221 |
Q |
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|| |||||||||||||||| |
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| T |
246108 |
taaaccatgctttgcaaca |
246126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 4370419 - 4370465
Alignment:
| Q |
157 |
tcaaatatttatttctaatctcatcataagagggtggcttaaatcct |
203 |
Q |
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| T |
4370419 |
tcaaatatttccctctaatctcatcataagacggtggcttaaatcct |
4370465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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