View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8560_low_43 (Length: 240)
Name: NF8560_low_43
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_43 |
 | |
|
| [»] scaffold0187 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 26842092 - 26841880
Alignment:
| Q |
1 |
ccattcttagaccaaaatcaatggcttccaattgatataacagtgcatcccttctttagagattttgaacaacctatcaatatatcaattcacttagcaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26842092 |
ccattcttcgaccaaaatcaatggcttccaacggatataacagtgcatcccttctttagagattttgaacaacctatcaatatatcaattcacttagcaa |
26841993 |
T |
|
| Q |
101 |
tcaaatgttcaaaaaattaagaa-------aaaatcttagagaaagctgctaccttaacattgnnnnnnngaagcatcgaaatttattgaaagctaaacc |
193 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
26841992 |
tcaaatgttcaaaaaattaagaaaaataacaaaatcttagagaaagctgctaccttaaaattgtttttttgaagcatcgaaatttattgaaagctaaacc |
26841893 |
T |
|
| Q |
194 |
ttgccaacagtag |
206 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26841892 |
ttgccaacagtag |
26841880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 18203322 - 18203172
Alignment:
| Q |
72 |
acctatcaatatatcaattcacttagcaatcaaatgttcaaaaaattaagaa-------aaaatcttagagaaagctgctaccttaacattgnnnnnnng |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
18203322 |
acctatcaatatatcaattcacttagcaatcaaatgttcaaaaaattaacaaaaaaaacaaaatcttagagaaagctgctaccttaacattgtttttttg |
18203223 |
T |
|
| Q |
165 |
aagcatcgaaatttattgaaagctaaaccttgccaacagtaggagaaggaaaggcaat |
222 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
18203222 |
a-------aaatttattgaaagctaaaccttgccaacagtaggaaaaggcaaggcaat |
18203172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36117643 - 36117529
Alignment:
| Q |
1 |
ccattcttagaccaaaatcaatggcttccaattgatataacagtgcatcccttctttagagattttgaacaacctatcaatatatcaattcacttagcaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| | ||||| ||||||| ||||| |||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
36117643 |
ccattcttcgaccaaaatcaatggcttccaatcgatataatggagcatcacttctttggagatcttgagcaacctatcaatatatcaattcttttaccaa |
36117544 |
T |
|
| Q |
101 |
tcaaatgttcaaaaa |
115 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
36117543 |
ccaaatgtccaaaaa |
36117529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 33226 - 33181
Alignment:
| Q |
177 |
ttattgaaagctaaaccttgccaacagtaggagaaggaaaggcaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
33226 |
ttattgaaagctaaaccttgccaacagtaggaaaaggcaaggcaat |
33181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 37905851 - 37905896
Alignment:
| Q |
177 |
ttattgaaagctaaaccttgccaacagtaggagaaggaaaggcaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
37905851 |
ttattgaaagctaaaccttgccaacagtaggaaaaggcaaggcaat |
37905896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University