View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_46 (Length: 239)
Name: NF8560_low_46
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2056822 - 2057045
Alignment:
| Q |
1 |
cctagaaaacgcgttgtaggttgcaaatgggtatatgcaaggagagacttgtcgctcaagggttatctcaacaacagtatggtatagattttctagacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2056822 |
cctagaaaacgcgttgtaggttgcaaatgggtatatgcaaggagagacttgtcgctcaagggttatctcaacaacagtatggtatagattttctagacac |
2056921 |
T |
|
| Q |
101 |
tttttcatttgtggcaaag-ttaacatctgtttggattctcctctcattgccttctcagtgaactcagtgaggaattggtatatgactctacctcacttc |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2056922 |
tttttcatttgtggcaaagtttaacatctgtttggattctcctctcattgccttctcagtgaactcagtgaggaattggtatatgactctacctcacttc |
2057021 |
T |
|
| Q |
200 |
acaccaagtttacaagttgaataa |
223 |
Q |
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|| ||||||||||||||||||||| |
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| T |
2057022 |
actccaagtttacaagttgaataa |
2057045 |
T |
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