View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_47 (Length: 233)
Name: NF8560_low_47
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 2829610 - 2829709
Alignment:
| Q |
115 |
gagaatggtgtcatctattaatttggattagattaattttagtaatgtaaatctatttagtgtattcactaatctaatctaaataatatttagaaccttt |
214 |
Q |
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| T |
2829610 |
gagaatggtgtcatctattaatttggattagattaattttagtgatgtaaatctatttagtgtattcactaatctaatctaaataatatttagaaccttt |
2829709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 2832585 - 2832459
Alignment:
| Q |
89 |
aaaaggtgaaggagaatggtgtcaaagagaatggtgtcatctattaatttggattagattaattttagtaatgtaaatctatttagtgtattcactaatc |
188 |
Q |
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| T |
2832585 |
aaaaagtgaaggagaatggtgtgaaagagaatggtgttatccattaatttggattagattaatttcagtaatttaaatcattttagtgtattcattaatc |
2832486 |
T |
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| Q |
189 |
taatctaaataatatttagaacctttt |
215 |
Q |
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| T |
2832485 |
taatctaaataatatttagaacctttt |
2832459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 2843035 - 2843136
Alignment:
| Q |
89 |
aaaaggtgaaggagaatggtgtcaaagagaatggtgtcatctattaatttggattagattaattttagtaatgtaaatctatttagtgtattcactaatc |
188 |
Q |
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| T |
2843035 |
aaaatgtgaaggagaatggtgtgaaagagaatggcgtcatccattgatttggattagattaatttcagt-atttaagtcaatttagtgtattcagtagtc |
2843133 |
T |
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| Q |
189 |
taa |
191 |
Q |
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||| |
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| T |
2843134 |
taa |
2843136 |
T |
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