View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_49 (Length: 228)
Name: NF8560_low_49
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26376006 - 26375780
Alignment:
| Q |
1 |
cttataaaggtttacctgaattttacatacttcttttggnnnnnnngtatatcagattcgtaggaccacggtgtttaattttgcaactgaatttttctct |
100 |
Q |
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| T |
26376006 |
cttataaaggtttacctgaattttacatacttcttttggaaaaaaagtatatcagattcgtaggac-acggtgtttaattttgcaactgaatttttctct |
26375908 |
T |
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| Q |
101 |
cttaatttacaggttggatttgggaaatgggaaaactcttgatcttgatcgctgtccccgaccaaagctccgaaaacaatgcataaagtatcttggaccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26375907 |
cttaatttacaggttggatttgggaaatgggaaaactcttgatcttgatcgctgtccccgaccaaagctccgaaaacaatgcataaagtatcttggaccg |
26375808 |
T |
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| Q |
201 |
gtatgtgcatgcatctgtttattggact |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
26375807 |
gtatgtgcatgcatctgtttattggact |
26375780 |
T |
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