View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8560_low_52 (Length: 205)

Name: NF8560_low_52
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8560_low_52
NF8560_low_52
[»] scaffold0314 (1 HSPs)
scaffold0314 (101-155)||(8953-9007)
[»] chr6 (9 HSPs)
chr6 (109-161)||(10031569-10031621)
chr6 (106-161)||(19369816-19369871)
chr6 (106-155)||(6751887-6751936)
chr6 (106-144)||(10158000-10158038)
chr6 (107-160)||(5579654-5579707)
chr6 (114-167)||(1334654-1334707)
chr6 (118-155)||(29959180-29959217)
chr6 (108-144)||(7942271-7942307)
chr6 (108-144)||(9024183-9024219)
[»] chr4 (13 HSPs)
chr4 (99-162)||(44362664-44362727)
chr4 (106-161)||(37496703-37496758)
chr4 (109-154)||(13307883-13307928)
chr4 (108-165)||(18513248-18513305)
chr4 (116-167)||(34589721-34589772)
chr4 (106-160)||(13117429-13117483)
chr4 (106-160)||(14465299-14465353)
chr4 (119-161)||(28663491-28663533)
chr4 (108-142)||(45615422-45615456)
chr4 (107-144)||(683068-683105)
chr4 (108-144)||(9988706-9988742)
chr4 (108-144)||(22596987-22597023)
chr4 (106-146)||(40224503-40224543)
[»] chr1 (3 HSPs)
chr1 (106-160)||(14332409-14332462)
chr1 (108-159)||(40176604-40176655)
chr1 (106-142)||(31667443-31667479)
[»] chr2 (8 HSPs)
chr2 (106-159)||(43586010-43586063)
chr2 (108-160)||(18512149-18512201)
chr2 (106-161)||(45000851-45000905)
chr2 (107-156)||(13501084-13501133)
chr2 (110-167)||(39399905-39399962)
chr2 (108-159)||(18570973-18571024)
chr2 (106-157)||(33884054-33884105)
chr2 (106-159)||(14373432-14373485)
[»] chr7 (12 HSPs)
chr7 (108-159)||(5937428-5937479)
chr7 (106-161)||(38134411-38134466)
chr7 (106-160)||(1885573-1885627)
chr7 (109-167)||(35238192-35238250)
chr7 (108-153)||(2144546-2144591)
chr7 (109-154)||(48964070-48964115)
chr7 (110-150)||(2143862-2143902)
chr7 (106-165)||(25956442-25956499)
chr7 (109-144)||(44172898-44172933)
chr7 (106-159)||(22801746-22801799)
chr7 (109-154)||(28635178-28635223)
chr7 (108-144)||(37775998-37776034)
[»] chr8 (9 HSPs)
chr8 (106-160)||(24295142-24295196)
chr8 (109-159)||(27733848-27733898)
chr8 (107-160)||(26915246-26915299)
chr8 (108-160)||(42874522-42874574)
chr8 (107-150)||(31119097-31119140)
chr8 (101-160)||(31548293-31548352)
chr8 (107-160)||(34073984-34074037)
chr8 (108-140)||(1586628-1586660)
chr8 (106-142)||(32696382-32696418)
[»] chr5 (7 HSPs)
chr5 (114-160)||(30080514-30080560)
chr5 (108-158)||(38784808-38784858)
chr5 (107-144)||(10009842-10009879)
chr5 (106-153)||(10010561-10010608)
chr5 (99-161)||(19167574-19167637)
chr5 (107-157)||(26205766-26205816)
chr5 (128-160)||(309158-309190)
[»] chr3 (8 HSPs)
chr3 (106-160)||(49179720-49179774)
chr3 (99-155)||(14338481-14338537)
chr3 (94-144)||(20691335-20691385)
chr3 (106-144)||(44427857-44427895)
chr3 (108-144)||(9210832-9210868)
chr3 (111-143)||(34409352-34409384)
chr3 (114-154)||(42076762-42076802)
chr3 (103-155)||(52558130-52558182)
[»] scaffold0024 (1 HSPs)
scaffold0024 (117-160)||(18124-18167)


Alignment Details
Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 9007 - 8953
Alignment:
Q  101 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 155  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatcg 8953  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 10031621 - 10031569
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 161  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 10031569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 19369871 - 19369816
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 161  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  19369871 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtca 19369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 6751887 - 6751936
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 155  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  6751887 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 10158038 - 10158000
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  10158038 ccgacacatgtgattacattgaattatgtcattttctca 10158000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 5579707 - 5579654
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    |||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  5579707 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtc 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 1334707 - 1334654
Alignment:
Q  114 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 167  Q
    ||||||||| |||||||||||| |||| ||| ||||||||| |||||| |||||    
T  1334707 tgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgt 1334654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 29959217 - 29959180
Alignment:
Q  118 attacgttgaattatgtcattttctcacaattttatcg 155  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 7942307 - 7942271
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  7942307 gacacatgtgattacattgaattatgtcattgtctca 7942271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 9024183 - 9024219
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  9024183 gacacatatgattacattgaattatgtcattttctca 9024219  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 44362727 - 44362664
Alignment:
Q  99 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcag 162  Q
    |||||| || |||| ||||||||| || |||||||||||||||||| |||||||||||||||||    
T  44362727 tctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtcag 44362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 37496758 - 37496703
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 161  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  37496758 ccgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtca 37496703  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 13307928 - 13307883
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctcacaattttatc 154  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 18513248 - 18513305
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 165  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||| ||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgt 18513305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 34589721 - 34589772
Alignment:
Q  116 tgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 167  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| |||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgt 34589772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 13117483 - 13117429
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||| ||||||||| ||||||| ||||||||||||  |||||||| ||||||    
T  13117483 ccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgtc 13117429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 14465299 - 14465353
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||||| ||||||  ||||||||||||||||||||| | | |||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 28663533 - 28663491
Alignment:
Q  119 ttacgttgaattatgtcattttctcacaattttatcggtgtca 161  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtca 28663491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 45615422 - 45615456
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttct 142  Q
    |||||||||||||||||| ||||||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcattttct 45615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 683105 - 683068
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctca 144  Q
    |||||||||||||||| || ||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcattttctca 683068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 9988706 - 9988742
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||||| || ||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcattttctca 9988742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 22596987 - 22597023
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||||||||||||||||  |||||||||    
T  22596987 gacacatgtgattacgttgaattatgcaattttctca 22597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 40224503 - 40224543
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcaca 146  Q
    ||||||||| ||||||| || ||||||||||||||||||||    
T  40224503 ccgacacatatgattacattaaattatgtcattttctcaca 40224543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 14332462 - 14332409
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14332462 ccgacatatgtgattacattgaattatgtcattttctca-aattttatcggtgtc 14332409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 40176655 - 40176604
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    ||||||||||||||| |||||| | |||||||||||| ||||||||||||||    
T  40176655 gacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgt 40176604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 31667479 - 31667443
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttct 142  Q
    ||||||||||||||||| || ||||||||||||||||    
T  31667479 ccgacacatgtgattacatttaattatgtcattttct 31667443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 43586010 - 43586063
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  43586010 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgt 43586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 18512149 - 18512201
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512149 gacacatgtgattacattgaattatattattttctcaaaattttatcggtgtc 18512201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 45000851 - 45000905
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 161  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  45000851 ccgacacatatgattacattgaattgtgtcattttctca-aattttatcggtgtca 45000905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 13501084 - 13501133
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcgg 156  Q
    |||||| ||||||||| ||||||||||||||||||| | |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcgg 13501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 39399962 - 39399905
Alignment:
Q  110 cacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 167  Q
    ||||||||| || |||||||||||||||||||| | ||||| |||||||||| |||||    
T  39399962 cacatgtgaataggttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgt 39399905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 18571024 - 18570973
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 33884105 - 33884054
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 157  Q
    ||||||| ||| |||||  ||||| |||||||||||||||||||||||||||    
T  33884105 ccgacacttgtaattacactgaatcatgtcattttctcacaattttatcggt 33884054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 14373432 - 14373485
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    ||||||||||||||||| |||||||||||||||   ||| |||||||| |||||    
T  14373432 ccgacacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgt 14373485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 5937428 - 5937479
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  5937428 gacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 38134411 - 38134466
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 161  Q
    ||||||||| ||||||| ||||||||||||||||||||| | | ||||||||||||    
T  38134411 ccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 1885627 - 1885573
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  1885627 ccgacacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtc 1885573  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 35238192 - 35238250
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 167  Q
    |||| ||||||||  ||||||||||||||||||||| ||| |||||||||||| |||||    
T  35238192 acacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgt 35238250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 2144546 - 2144591
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttat 153  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 48964070 - 48964115
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctcacaattttatc 154  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 2143862 - 2143902
Alignment:
Q  110 cacatgtgattacgttgaattatgtcattttctcacaattt 150  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  2143862 cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 25956499 - 25956442
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 165  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||  ||||||||||    
T  25956499 ccgacacttgtgattacattgaattatgtcattt--tcacaattttatttgtgtcagtgt 25956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 44172898 - 44172933
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctca 144  Q
    |||||||||||||| |||||||||||||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctca 44172933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 22801746 - 22801799
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    ||||||| |||||||||  |||||||||||||| ||||| ||||| ||||||||    
T  22801746 ccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 22801799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 28635178 - 28635223
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctcacaattttatc 154  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||    
T  28635178 acacatgtgattacgttgaattgtgaaattttctcaaaattttatc 28635223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 37776034 - 37775998
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37776034 gacacatgtgattacatttaattatgtcattttctca 37775998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 24295142 - 24295196
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||| ||||||||| || |||| |||||||||||||||||||||||| ||||    
T  24295142 ccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtc 24295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 27733898 - 27733848
Alignment:
Q  109 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 159  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 26915246 - 26915299
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    |||||| ||||||||| || |||||||||||||||||| ||||||||| |||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 42874574 - 42874522
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  42874574 gacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtc 42874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctcacaattt 150  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 31548293 - 31548352
Alignment:
Q  101 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||| |   |||||||||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtc 31548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 34073984 - 34074037
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    |||||| | ||||||| || |||||||||||||| ||| |||||||||||||||    
T  34073984 cgacacttatgattacattaaattatgtcattttttcaaaattttatcggtgtc 34074037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 1586660 - 1586628
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcatttt 140  Q
    |||||||||||||||||| ||||||||||||||    
T  1586660 gacacatgtgattacgttcaattatgtcatttt 1586628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 32696418 - 32696382
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttct 142  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  32696418 ccgacacatgtgattatgttcaattatgtcattttct 32696382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 30080514 - 30080560
Alignment:
Q  114 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  30080514 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 30080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 38784858 - 38784808
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtg 158  Q
    ||||| ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  38784858 gacacttgtgattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 10009879 - 10009842
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctca 144  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10009879 cgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 10010608 - 10010561
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttat 153  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  10010608 ccgacacatgtgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 19167574 - 19167637
Alignment:
Q  99 tctgacgccgacacatgtgattacgttgaattatgtcattttct-cacaattttatcggtgtca 161  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||| | || ||||||||||||||||    
T  19167574 tctgacaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtca 19167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 26205766 - 26205816
Alignment:
Q  107 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 157  Q
    |||||| | |||||||  |||||||||||||||||||| ||||||||||||    
T  26205766 cgacacctatgattacactgaattatgtcattttctcaaaattttatcggt 26205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 309190 - 309158
Alignment:
Q  128 attatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||||||||||||| |||||||||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtc 309158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 49179720 - 49179774
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    ||||||| ||||||||| | ||||||||||| ||||||| |||||||||||||||    
T  49179720 ccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtc 49179774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 14338481 - 14338537
Alignment:
Q  99 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 155  Q
    |||||| ||||||  ||||||||| ||||||||||||||||| ||| ||||||||||    
T  14338481 tctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 20691385 - 20691335
Alignment:
Q  94 gtgtctctgacgccgacacatgtgattacgttgaattatgtcattttctca 144  Q
    |||| |||||| ||||||||| |||||||  ||||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttctca 20691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 44427895 - 44427857
Alignment:
Q  106 ccgacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427895 ccgacacatgtgattacattggattatgtcattttctca 44427857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 9210832 - 9210868
Alignment:
Q  108 gacacatgtgattacgttgaattatgtcattttctca 144  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9210832 gacacatgtgattccattgaattatgtcattttctca 9210868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 34409352 - 34409384
Alignment:
Q  111 acatgtgattacgttgaattatgtcattttctc 143  Q
    |||||||||||| ||||||||||||||||||||    
T  34409352 acatgtgattacattgaattatgtcattttctc 34409384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 42076762 - 42076802
Alignment:
Q  114 tgtgattacgttgaattatgtcattttctcacaattttatc 154  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  42076762 tgtgattacattgaattaggtcattttcccacaattttatc 42076802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 52558130 - 52558182
Alignment:
Q  103 acgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 155  Q
    ||||| || ||||||||||| |||||||||||| |||||||| | ||||||||    
T  52558130 acgcccacgcatgtgattacattgaattatgtccttttctcaaatttttatcg 52558182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 18124 - 18167
Alignment:
Q  117 gattacgttgaattatgtcattttctcacaattttatcggtgtc 160  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||    
T  18124 gattacattgaattatgttattttctcaaaattttatcggtgtc 18167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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