View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_54 (Length: 202)
Name: NF8560_low_54
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 52145946 - 52145779
Alignment:
| Q |
18 |
actctttaattaattatttttgcaacaaccacacgcaactctttgggttaatatttgcttctaatgtagtacagtacgattaactttcaataccaatatg |
117 |
Q |
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| T |
52145946 |
actctttaattaattatttgtgcaacaaccacacgcaactctttgggttaatatttgcttctaatgtagtacagtactattaactttcaataccaatatg |
52145847 |
T |
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| Q |
118 |
gcttcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttct |
185 |
Q |
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| T |
52145846 |
gcttcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttct |
52145779 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 52142321 - 52142261
Alignment:
| Q |
125 |
cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttct |
185 |
Q |
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| T |
52142321 |
cttcttcttccaccaaagtctccatgaagcttcttatcgacacaaagaatcagaaagttct |
52142261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 17522266 - 17522326
Alignment:
| Q |
125 |
cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttct |
185 |
Q |
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|||||||| ||||||||||||| ||||||||||||| || ||||||||| |||||||||| |
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| T |
17522266 |
cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttct |
17522326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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