View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8560_low_7 (Length: 445)
Name: NF8560_low_7
Description: NF8560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8560_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 36281088 - 36281495
Alignment:
| Q |
1 |
ctcatagtctgccaccacacctacccatcacccctctcaacacacaaccgccccttcctacccctaacaagcacataccaccatgagcacataacaccat |
100 |
Q |
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| T |
36281088 |
ctcatagtctgccaccacacctacccatcgcccctctcaacacacaaccgccccttcctacccctaacaagcacataccaccataagcacataacaccat |
36281187 |
T |
|
| Q |
101 |
acgacgtggctaaaataatattagaaaatttgtcaaatggaattaaataccatgtactatttcacctaaactatagttttagcaattttattcaactagt |
200 |
Q |
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| T |
36281188 |
atgacgtggctaaaataatattagaaaatttgtcaaatggaattaaataccatgtactatttcacctaaactatagttttagcaattttattcaactagt |
36281287 |
T |
|
| Q |
201 |
ttattagccaaagtcgatttataatcctaacaattgttaattgaaataaaataagccgtcaaatctcattaatatttcattttttgtagacatcatttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36281288 |
ttattagccaaagtcgatttataatcctaacaattgttaattgaaataaaataagccgtcaaatctcattaatatttcattttttgtagacatcatttat |
36281387 |
T |
|
| Q |
301 |
atgtaaaaactagcccatagacccaacacggcgtggtgcgatagctttacttggtaggt-----tagttaatcagtcatttcttggtaatctagttttag |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36281388 |
atgtaaaaactagcccatagacccaacacggcgtggtgcgatagctttacttggtaggtagcgctagttaatcagtcatttcttggtaatctagttttag |
36281487 |
T |
|
| Q |
396 |
gttgaggg |
403 |
Q |
| |
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|||||||| |
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| T |
36281488 |
gttgaggg |
36281495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 7130187 - 7130227
Alignment:
| Q |
2 |
tcatagtctgccaccacacctacccatcacccctctcaaca |
42 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| |
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| T |
7130187 |
tcatagtctgccgccacaccgacccatcacccctctcaaca |
7130227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 6818225 - 6818197
Alignment:
| Q |
26 |
catcacccctctcaacacacaaccgcccc |
54 |
Q |
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| T |
6818225 |
catcacccctctcaacacacaaccgcccc |
6818197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1072493 - 1072450
Alignment:
| Q |
1 |
ctcatagtctgccaccacacctacccatcacccctctcaacaca |
44 |
Q |
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| T |
1072493 |
ctcatagtctgccaccataccgacccatcacccctctcaacaca |
1072450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 1489821 - 1489861
Alignment:
| Q |
125 |
aaaatttgtcaaatggaattaaataccatgtactatttcac |
165 |
Q |
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| T |
1489821 |
aaaatttgtcaaatgaaattaaatagcatgtacaatttcac |
1489861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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