View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_high_4 (Length: 372)
Name: NF8561_high_4
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 263 - 363
Target Start/End: Complemental strand, 7908568 - 7908468
Alignment:
| Q |
263 |
tttgatactcactgattcatgacttgagataaacggacctgcagaatgttttggagacatttcactctatcctccgctatttgcatatcatctctgctac |
362 |
Q |
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| T |
7908568 |
tttgatactcactgattcatgacttgagataaacggacctgcagaatgttttggagacatttcactatatcctccgctatttgcatatcatctctgatac |
7908469 |
T |
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| Q |
363 |
t |
363 |
Q |
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| T |
7908468 |
t |
7908468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 7352841 - 7352923
Alignment:
| Q |
90 |
ttcaactaagtaatccattcatttacaaccatttgagtaagaaactatctgtgatttctaattaaacacaaaaaatagcatcaaaat |
176 |
Q |
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| T |
7352841 |
ttcaactaactaatccattcatttacaaccatttgagtaagaaacaatctctgatttc----tgaacacaaacaatagcatcaaaat |
7352923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 7332107 - 7332139
Alignment:
| Q |
103 |
tccattcatttacaaccatttgagtaagaaact |
135 |
Q |
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| T |
7332107 |
tccattcatttacaaccatttgagtaagaaact |
7332139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 7291095 - 7291131
Alignment:
| Q |
90 |
ttcaactaagtaatccattcatttac-aaccatttga |
125 |
Q |
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| T |
7291095 |
ttcaactaagtaatccattcatttacaaaccatttga |
7291131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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