View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8561_high_6 (Length: 252)

Name: NF8561_high_6
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8561_high_6
NF8561_high_6
[»] chr8 (11 HSPs)
chr8 (1-236)||(30648703-30648938)
chr8 (137-236)||(26089181-26089280)
chr8 (106-233)||(27714265-27714392)
chr8 (140-233)||(29552745-29552838)
chr8 (140-236)||(14727714-14727810)
chr8 (139-242)||(15329808-15329911)
chr8 (139-242)||(15510177-15510280)
chr8 (131-228)||(24509272-24509369)
chr8 (1-46)||(14727566-14727611)
chr8 (1-46)||(26089066-26089111)
chr8 (136-229)||(28693205-28693298)
[»] chr7 (2 HSPs)
chr7 (136-236)||(6610917-6611017)
chr7 (141-199)||(17292704-17292762)
[»] chr3 (2 HSPs)
chr3 (131-233)||(4819858-4819960)
chr3 (1-42)||(4819728-4819769)
[»] chr1 (1 HSPs)
chr1 (136-227)||(26086457-26086548)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30648703 - 30648938
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgattatccatcatttgatcatagaataagatcaaagatcacaattataggtgctctg 100  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| ||    
T  30648703 tatattattaagtgttggaacaaaacctagctcagaagtcactgattatcccacatgtgatcatagaataagatcaaagatcacaactataggtgctgtg 30648802  T
Q  101 ggaatttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcag 200  Q
      |||||||||| ||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648803 acaatttatataaatcgcattagaggagatatatcagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcag 30648902  T
Q  201 gattgagtccccctggtggaatttatcaggttagtg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  30648903 gattgagtccccctggtggaatttatcaggttagtg 30648938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 26089181 - 26089280
Alignment:
Q  137 gaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtg 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  26089181 gaggagcaacgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttatcaggttagtg 26089280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 27714265 - 27714392
Alignment:
Q  106 ttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattg 205  Q
    ||||||| ||||||||| ||  ||  |||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||| |||||||||| ||||    
T  27714265 ttatataaatcgcattagaaatgatgtattagaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattg 27714364  T
Q  206 agtccccctggtggaatttatcaggtta 233  Q
    | ||||  ||||||| ||||||||||||    
T  27714365 actcccgttggtggagtttatcaggtta 27714392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 29552745 - 29552838
Alignment:
Q  140 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggtta 233  Q
    |||||||||||||||  ||||||||||||  | ||||||| |||||||| ||||||||||| | | ||||||||||||||| ||||||||||||    
T  29552745 gagcaacgtaacactatgttgatagttgcagcccttgttgtgactgccacctatcaatcagtactaagtccccctggtggagtttatcaggtta 29552838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 14727714 - 14727810
Alignment:
Q  140 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtg 236  Q
    |||||||| |||| |||||||||||| || |||||| |||| |||||||| || |||||||  |||||||||||||||||| |||||||| ||||||    
T  14727714 gagcaacgcaacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtggagtttatcagattagtg 14727810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 15329808 - 15329911
Alignment:
Q  139 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgat 238  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| |||||| |    
T  15329808 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15329907  T
Q  239 gatg 242  Q
    ||||    
T  15329908 gatg 15329911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 15510177 - 15510280
Alignment:
Q  139 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgat 238  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| |||||| |    
T  15510177 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15510276  T
Q  239 gatg 242  Q
    ||||    
T  15510277 gatg 15510280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 24509272 - 24509369
Alignment:
Q  131 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatca 228  Q
    ||||||||||||||||| | |||||||||||| |||||||| || ||||| || || | ||||||| ||| | | | ||||||||| ||| |||||||    
T  24509272 atattagaggagcaacgcagcacttggttgattgttgcgaccctcgttgcaacagcgacctatcaaacagtactaaatccccctggcggattttatca 24509369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14727566 - 14727611
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgat 46  Q
    |||||||||||||||||||||||||| |||| | |||||| |||||    
T  14727566 tatattattaagtgttggagcaaaacatagcatagaagtcgctgat 14727611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26089066 - 26089111
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgat 46  Q
    ||||||||||||| ||||||||||||||||| | ||| ||||||||    
T  26089066 tatattattaagttttggagcaaaacctagcatagaaatcactgat 26089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 28693298 - 28693205
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcag 229  Q
    |||||| ||||| |||| |||||| ||||| ||||||||| |||| ||| |||| | | ||||||   |||  |||||||||||||||||||||    
T  28693298 agaggatcaacgcaacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcag 28693205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 6611017 - 6610917
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 235  Q
    ||||||| | |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6611017 agaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagt 6610918  T
Q  236 g 236  Q
    |    
T  6610917 g 6610917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 17292762 - 17292704
Alignment:
Q  141 agcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatca 199  Q
    ||||||| ||||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  17292762 agcaacgcaacacttggttgataattgcgactcttgttgcaacagccacctatcaatca 17292704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 4819858 - 4819960
Alignment:
Q  131 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcagg 230  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||| | ||  ||| || |||||| |||||||||    
T  4819858 atatcagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcagg 4819957  T
Q  231 tta 233  Q
    |||    
T  4819958 tta 4819960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4819728 - 4819769
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcac 42  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  4819728 tatattatcaagtgttggagcaaaacctggcttggaagtcac 4819769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 26086548 - 26086457
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatc 227  Q
    |||||||||||| |||| |||||| ||||| ||  ||||| |||||||| |||| ||| ||||||   ||| ||||||||||||| ||||||    
T  26086548 agaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatc 26086457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University