View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8561_high_7 (Length: 245)
Name: NF8561_high_7
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 39195911 - 39195680
Alignment:
| Q |
1 |
ttagattttctaacattctctcacacaaggaaaggaatacagttcatggtcatgcaatcacttgggactgtatgacttgacttgaattacgacttttcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39195911 |
ttagattttctaacattctctcacacaaggaaaggaatacagttcatggtcatgcaatcacttgggactgtatgacttgacttgaattaagacttttcta |
39195812 |
T |
|
| Q |
101 |
acctagtttaagcctatttaatttgcctaaataagctaggccttttgtttcaaatagaagctgcaattacagatgtgactgtggttgcagccactgcgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39195811 |
acctagtttaagcctatttaatttgcctaaataagctaggccttttgtttcaaatagaagctgcaattacagatgtgactgtggttgcagccactgcgac |
39195712 |
T |
|
| Q |
201 |
tgcaattgtgaacattgtgattgttgtgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39195711 |
tgcaattgtgaacattgtgattgttgtgatgt |
39195680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 39217524 - 39217337
Alignment:
| Q |
1 |
ttagattttctaacattctctcacacaaggaaaggaatacagttcatggtcatgcaatcacttgggactgtatgacttgacttgaattacgacttttcta |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| ||||||||||| || ||||||||| |||||| | ||||||||||||| || ||||||| |
|
|
| T |
39217524 |
ttagattctctaacattttctcacacaaggaaaggaatg--gttcatggtcaagctatcacttggagctgtatcaattgacttgaattaggaattttcta |
39217427 |
T |
|
| Q |
101 |
acctagtttaagcctatttaatttgcctaaataagctaggccttttgtttcaaatagaagctgcaattacagatgtgactgtggttgcagccactgc |
197 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39217426 |
acatagcttaagcctattt------gctaaataagctaag-cttttgtttcaaacagaagctgcaattacagatgtgactgcggttgcagccactgc |
39217337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University