View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_high_8 (Length: 239)
Name: NF8561_high_8
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39196042 - 39196265
Alignment:
| Q |
1 |
tttgtttatggactcccccatcccatcccaatcataatgttcatccaataa-ttttacctgctactaagtagcatatactcaaatgatgaaaataaatat |
99 |
Q |
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| T |
39196042 |
tttgtttatggactcccccatcccatcccaatcataatgttcatccaataaattttacctgctactaagtagcatatactcaaatgatgaaaataaatat |
39196141 |
T |
|
| Q |
100 |
cattacataccaagagataaatgcatgatgcaattacgaaggtccaatagcggccaaaataagcatcggctatgtaagctcctacaagtggcatcatcca |
199 |
Q |
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| T |
39196142 |
cattacataccaagagataaatgcatgatgcaattacgaaggtccaatagcggccaaaataagcatcggctatgtaagctcctacaagtggcatcatcca |
39196241 |
T |
|
| Q |
200 |
caccgaacccgcccagttgctaac |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39196242 |
caccgaacccgcccagttgctaac |
39196265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 39224772 - 39224973
Alignment:
| Q |
22 |
cccatcccaatcataatgttcatccaataattttacctgctactaagtagcatatactcaaatgatgaaaataaatatcattacataccaagagataaat |
121 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224772 |
cccatcccaatcataatatgcatccaataattttacctgctactaagtagcatatactcaaatgatgaaaataaatatcattacataccaagagataaat |
39224871 |
T |
|
| Q |
122 |
gcatgatgcaattacgaaggtccaatagcggccaaaataagcatcggctatgtaagctcctacaagtggcatcatccacaccgaacccgcccagttgcta |
221 |
Q |
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| T |
39224872 |
gcatgatgcaactacaaaggtccaatagcggccaaaataagcatcggcaatgtaagctcctacaagtggcatcatccacaccgaacctgcccagttgcta |
39224971 |
T |
|
| Q |
222 |
ac |
223 |
Q |
| |
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|| |
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|
| T |
39224972 |
ac |
39224973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 39217686 - 39217875
Alignment:
| Q |
34 |
ataatgttcatccaataattttacctgctactaagtagcatatactcaaatgatgaaaataaatatcattacataccaagagataaatgcatgatgcaat |
133 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39217686 |
ataatgttcatccaataattttacctacctctaagtagcatatattcaaatgatgaaaataaatatcattacataccaagagataaatgcatgatgcaat |
39217785 |
T |
|
| Q |
134 |
tacgaaggtccaatagcggccaaaataagcatcggctatgtaagctcctacaagtggcatcatccacaccgaacccgcccagttgctaac |
223 |
Q |
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| T |
39217786 |
tacaaaggtccaatagcgaccgaaataagcatcggctatgtaagctcctacaagtggcatcatccacaccaaccccttccagttgctaac |
39217875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 39257931 - 39258049
Alignment:
| Q |
105 |
cataccaagagataaatgcatgatgcaattacgaaggtccaatagcggccaaaataagcatcggctatgtaagctcctacaagtggcatcatccacaccg |
204 |
Q |
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|||||||||||||||||||| ||||||| ||| |||||||| || || |||| ||| ||||| |||| ||||||||||||||||||||||||||| || | |
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| T |
39257931 |
cataccaagagataaatgcacgatgcaactacaaaggtccagtatcgaccaagatatgcatcagctacgtaagctcctacaagtggcatcatccaaactg |
39258030 |
T |
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| Q |
205 |
aacccgcccagttgctaac |
223 |
Q |
| |
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|||||||||| |||||||| |
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| T |
39258031 |
aacccgcccaattgctaac |
39258049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 39179024 - 39179183
Alignment:
| Q |
63 |
actaagtagcatatactcaaatgatgaaaataaatat--cattacataccaagagataaatgcatgatgcaattacgaaggtccaatagcggccaaaata |
160 |
Q |
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||||||||||||||| ||||||||||| ||||||| | |||| ||||||| || |||||||||||||||||| || |||||| |||| | |||| ||| |
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| T |
39179024 |
actaagtagcatatattcaaatgatgacaataaatttaacatttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatatcttccaagata |
39179123 |
T |
|
| Q |
161 |
agcatcggctatgtaagctcctacaagtggcatcatccacaccgaacccgcccagttgct |
220 |
Q |
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||||| |||||||| |||||| ||||||||||||||||||| | |||| || ||||||| |
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| T |
39179124 |
ggcatcagctatgtaggctcctgcaagtggcatcatccacactgcaccccccaagttgct |
39179183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 39240355 - 39240445
Alignment:
| Q |
105 |
cataccaagagataaatgcatgatgcaattacgaaggtccaatagcggccaaaataagcatcggctatgtaagctcctacaagtggcatca |
195 |
Q |
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||||||| ||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||||||| |||||||||||| |
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| T |
39240355 |
cataccatgaggtaaatgcatgatgcaattacaaaggtccaatatcggccaagataagcatcagctacataagctcctgcaagtggcatca |
39240445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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