View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_1 (Length: 653)
Name: NF8561_low_1
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 30891360 - 30891684
Alignment:
| Q |
15 |
gtaacaacattctgcatgcttccttgtatagctatttccatgaggttgatggatatatcaggaaggaggtatgtttacactgagtcatagcctgaatttc |
114 |
Q |
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| T |
30891360 |
gtaacaacattctgcatgcttccttgtatagctatttccatgaggttgatggatatatcaggaaggaggtatgtttacactgagtcatagcctgaatttc |
30891459 |
T |
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| Q |
115 |
cttttagtactgtacctgttcttgcaagaaaacgacatgacaccgacacatttagttaaaggcgtgtttgttgtccaacacatattagtgtcggaaaacg |
214 |
Q |
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| T |
30891460 |
cttttagtactgtacctgttcttgcaagaaaacgacatgacaccgacacatttagtt-aaggcgtgtttgttgtccaacacatattagtgtcggaaaacg |
30891558 |
T |
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| Q |
215 |
acacaacaccgacacatttagttaaaatattcaatcacttacattttctcaaattactgacaatgaccacatgttagtgtcattgtcgtgtttggaatcc |
314 |
Q |
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| T |
30891559 |
acacgacaccgacacatttagttaaaatattcaatcgcttacattttctcaaattactgacaatgaccacatgttagtgtcattgtcgtctttgtaatcc |
30891658 |
T |
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| Q |
315 |
gtatcattgtcggtagttcatagatt |
340 |
Q |
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| T |
30891659 |
gtatcattgtcggtagttcatagatt |
30891684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 324 - 638
Target Start/End: Original strand, 30891698 - 30892012
Alignment:
| Q |
324 |
tcggtagttcatagattgagacttagttgatcgtagagaaatgaaaagtacaatttattcttagtcacttctaggaatttttaaggatattagtctgtat |
423 |
Q |
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| T |
30891698 |
tcggtagttcatagattgagacctagttgatcgtagagaaatgaaaagtacgattcattcttagtcacttctaggaatttttaaggatattagtctgtat |
30891797 |
T |
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| Q |
424 |
gcaagactattttaagcgacattaaattttttaagatcaaattgatacttttaatttctcagaattcaaactagtctatatctcttgacggagaacttta |
523 |
Q |
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| T |
30891798 |
gcaagactattttaagcgacatgaaattttttaagatcaaattgatacttttcatttctcagaattcaaactagtctatatctcttgacggagaacttta |
30891897 |
T |
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| Q |
524 |
ccaccctttgtggtcctatccgactcgagggattagaatatatgtataatgaccatgacattgtttatttcttatggcacaggtcaatattgctctacac |
623 |
Q |
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| T |
30891898 |
ccaccctctgtggtcctatccgactcgagggattagaatatatgtataatgaccatgacattgtttatttcttatggcacaggtcaataatgctctacac |
30891997 |
T |
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| Q |
624 |
aattccaattctgat |
638 |
Q |
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| T |
30891998 |
aattccaattctgat |
30892012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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