View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_16 (Length: 239)
Name: NF8561_low_16
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_16 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 150803 - 151025
Alignment:
| Q |
17 |
agcaggtaggtactacattatcatcaccaattctatttgttttcaagggtgtaattatgaagctctttgttttttaattctagtgtttgttgactttttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150803 |
agcaggtaggtactacattatcatcaccaattctatttgttttcaagggtgtaattatgaagctctttgttttttaattctagtgtttgttgactttttt |
150902 |
T |
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| Q |
117 |
cgcttatatttcaagttaggtttattatatgagttgaagatttggtatgatgagagtgacgtaaaatacaagaacgtctaatatggtttcttatgtactc |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150903 |
cgcttatatttcaagttagatttattatatgagttgaagatttggtatgatgagagtgacgtaaaatacaagaacgtctaatatggtttcttatgtactc |
151002 |
T |
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| Q |
217 |
nnnnnnnctgctacaatatttcc |
239 |
Q |
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|||||||||||||||| |
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| T |
151003 |
tttttttctgctacaatatttcc |
151025 |
T |
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