View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_17 (Length: 235)
Name: NF8561_low_17
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 2451088 - 2451303
Alignment:
| Q |
18 |
gtttttacattgtcccgaatcgcgcatggggtggatggtgctacataagggtttggaa------------cctgcattgtacccaattcgacataaataa |
105 |
Q |
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| T |
2451088 |
gtttttacattgtcccgaatcgcgcatggggtggatggtgctacataagggtttggaataagtgttctaacctgcattgtacccaattcgacataaataa |
2451187 |
T |
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| Q |
106 |
gaaagtttatttgacttaaatatgttaggtttacaacaaatttatctatgaattgaatataaataatcaaagattttgttgttatgattatcatatttaa |
205 |
Q |
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| T |
2451188 |
gaaagtttatttgacttaaatttgttaggtttacaacaaatttatctatgaattgaatataaataatcaaagattttgttgttatgattatcatatttaa |
2451287 |
T |
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| Q |
206 |
ttttcatcatgatgtc |
221 |
Q |
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| T |
2451288 |
ttttcatcatgatgtc |
2451303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 2462102 - 2462330
Alignment:
| Q |
22 |
ttacattgtcccgaatcgcgcatggggtggatggtgctacataagggtttggaa------------cctgcattgtacccaattcgacataaataagaaa |
109 |
Q |
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| T |
2462102 |
ttacattgtcgcgaatcacgcatggggtggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaa |
2462201 |
T |
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| Q |
110 |
gtttatttgacttaaatatgttaggtttacaaca------------------aatttatctatgaattgaatataaataatcaaagattttgttgttatg |
191 |
Q |
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| T |
2462202 |
gtttatttgacttaaatatgtcaggtgtacaacaaaatttgttgttatgattaatatatcaatgaattgcatataaataaacaaagtttttgttgttatg |
2462301 |
T |
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| Q |
192 |
attatcatatttaattttcatcatgatgtc |
221 |
Q |
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| T |
2462302 |
attatcatatttaa-tttcatcatgatgtc |
2462330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 2446379 - 2446473
Alignment:
| Q |
77 |
ctgcattgtacccaattcgacataaataagaaagtttatttgacttaaatatgttaggtttacaacaaatttatcta-tgaattgaatataaata |
170 |
Q |
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| T |
2446379 |
ctgcattggacccgattctacataaataagaaagtttatttgactaaaatttgttaggtgtccaacaaattattccactgaattgaatataaata |
2446473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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