View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8561_low_2 (Length: 639)

Name: NF8561_low_2
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8561_low_2
NF8561_low_2
[»] chr3 (4 HSPs)
chr3 (1-498)||(37317451-37317955)
chr3 (421-498)||(38889292-38889370)
chr3 (554-624)||(37318011-37318081)
chr3 (435-487)||(39008654-39008706)
[»] chr1 (3 HSPs)
chr1 (422-498)||(51051587-51051664)
chr1 (421-498)||(37213955-37214033)
chr1 (448-487)||(47335007-47335046)
[»] chr4 (3 HSPs)
chr4 (420-496)||(4061001-4061078)
chr4 (423-487)||(7678171-7678235)
chr4 (454-487)||(44454369-44454402)
[»] chr7 (1 HSPs)
chr7 (454-487)||(7441625-7441658)
[»] chr5 (2 HSPs)
chr5 (423-497)||(12601964-12602039)
chr5 (423-484)||(5245838-5245899)
[»] chr2 (2 HSPs)
chr2 (422-498)||(6213507-6213582)
chr2 (455-487)||(43792864-43792896)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 37317451 - 37317955
Alignment:
Q  1 gtaatgtgaaacaactaatttaattgaaatatagtgnnnnnnnnggtagtgtaattgacatatagtgtttgattgtaggtaaacttggacttt-gtgttt 99  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  37317451 gtaatgtgaaacaactaatttaattgaaatatagtgttttttttggtagtgtaattgaaatatagtgtttgattgtaggtaaacttggacttttgtgttt 37317550  T
Q  100 tattatattcttatcgttgaacactcgcgcatgtaaacgcaggtttttatttgctccctttaattcatattttaaagcggggtaata----gagctcttg 195  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  37317551 tattatattcttaccgttgaacactcgcgcatgtaaacgcaggtttttatttgctccctttaattcatattttaaagcggggtaataaatagagctcttg 37317650  T
Q  196 accnnnnnnnnnnnnnnncggggtaatagagcatgctaatgctgattaggactcgtgttaatgttgcaaacggtaaatatttgaaggtgtaaaatttcaa 295  Q
    |||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37317651 accaaaaaaagaaaaa--cggggtaatagagcatgctaatgctgattaggactcgtgttaatgttgcaaacggtaaatatttgaaggtgtaaaatttcaa 37317748  T
Q  296 tagaaatttaaccgatcctaaatttagaaggtctaaatcttatagagcatatttaaccataaaagttgttcttcttggctaatgttataagtgtactaac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37317749 tagaaatttaaccgatcctaaatttagaaggtctaaatcttatagagcatatttaaccataaaagttgttcttcttggctaatgttataagtgtactaac 37317848  T
Q  396 taattacttccttgtaaacc----ttgtatggaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgagaaaggta 491  Q
    |||||| |||||||||||||    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37317849 taattagttccttgtaaacctttgttgtatggaaaatacttaattgaacacaaatatttggacactaaatttagacacacatacataattaagaaaggta 37317948  T
Q  492 gaaagag 498  Q
    |||||||    
T  37317949 gaaagag 37317955  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 38889370 - 38889292
Alignment:
Q  421 tggaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag-aaaggtagaaagag 498  Q
    ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38889370 tggaaaatacttacttgaacacaagtatttggacactaaatttagacacacatacataattgagaaaaggtagaaagag 38889292  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 554 - 624
Target Start/End: Original strand, 37318011 - 37318081
Alignment:
Q  554 tgtgtgcacctaaatagcgtgtccaaaaacttgtgattatgcaagactttctcttactgtattgtcatata 624  Q
    ||||||||||||||||| |||| |||||  ||||||  |||||||||||||||||| ||||||| ||||||    
T  37318011 tgtgtgcacctaaatagtgtgttcaaaattttgtgaacatgcaagactttctcttattgtattgccatata 37318081  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 487
Target Start/End: Complemental strand, 39008706 - 39008654
Alignment:
Q  435 ttggatacaaatatttggacactaaatttagacacacatacataattgagaaa 487  Q
    ||||| |||| | ||||| ||| || |||||||||||||||||||||||||||    
T  39008706 ttggacacaagtgtttggtcacaaactttagacacacatacataattgagaaa 39008654  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 422 - 498
Target Start/End: Complemental strand, 51051664 - 51051587
Alignment:
Q  422 ggaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag-aaaggtagaaagag 498  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51051664 ggaaaatacttacttggacacaagtatttggacactaaatttagacacacatacataattgagaaaaggtagaaagag 51051587  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 37213955 - 37214033
Alignment:
Q  421 tggaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag-aaaggtagaaagag 498  Q
    ||||||||||||| |||||  | | ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  37213955 tggaaaatacttacttggactcgagtatttgggcactaaatttagacacacatacataattgagaaaaggtagaaagag 37214033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 47335007 - 47335046
Alignment:
Q  448 tttggacactaaatttagacacacatacataattgagaaa 487  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  47335007 tttggtcactaaatttaggcacacatacataattgagaaa 47335046  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 4061078 - 4061001
Alignment:
Q  420 atggaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag-aaaggtagaaag 496  Q
    |||||||||||||| ||||| ||||   ||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  4061078 atggaaaatacttacttggacacaagagtttggacactaaatttagacacacatacacaattgagaaaaggtagaaag 4061001  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 423 - 487
Target Start/End: Complemental strand, 7678235 - 7678171
Alignment:
Q  423 gaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgagaaa 487  Q
    ||||||||||| ||||| ||||   |||||||||||||||||| |||||||||||||||||||||    
T  7678235 gaaaatacttacttggacacaagggtttggacactaaatttaggcacacatacataattgagaaa 7678171  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 44454369 - 44454402
Alignment:
Q  454 cactaaatttagacacacatacataattgagaaa 487  Q
    ||||||||||||||||||||||||||||||||||    
T  44454369 cactaaatttagacacacatacataattgagaaa 44454402  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 7441625 - 7441658
Alignment:
Q  454 cactaaatttagacacacatacataattgagaaa 487  Q
    ||||||||||||||||||||||||||||||||||    
T  7441625 cactaaatttagacacacatacataattgagaaa 7441658  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 497
Target Start/End: Original strand, 12601964 - 12602039
Alignment:
Q  423 gaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag-aaaggtagaaaga 497  Q
    ||||||||||| ||||| |||| | ||| | || ||||||||||||| ||||||||||| || |||||||||||||    
T  12601964 gaaaatacttacttggacacaagtgtttaggcattaaatttagacacgcatacataattaagtaaaggtagaaaga 12602039  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 5245838 - 5245899
Alignment:
Q  423 gaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag 484  Q
    ||||||||||| ||| | |||   |||||| ||||||||||||||||||||||| |||||||    
T  5245838 gaaaatacttacttgcacacacggatttgggcactaaatttagacacacatacacaattgag 5245899  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 6213507 - 6213582
Alignment:
Q  422 ggaaaatacttaattggatacaaatatttggacactaaatttagacacacatacataattgag-aaaggtagaaagag 498  Q
    |||||||||||| ||||| ||||   ||||| ||||||||| ||  ||||||||||||||||| ||||||||||||||    
T  6213507 ggaaaatacttacttggacacaagggtttgggcactaaattaag--acacatacataattgagaaaaggtagaaagag 6213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 43792864 - 43792896
Alignment:
Q  455 actaaatttagacacacatacataattgagaaa 487  Q
    ||||||||||| |||||||||||||||||||||    
T  43792864 actaaatttaggcacacatacataattgagaaa 43792896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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