View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_20 (Length: 225)
Name: NF8561_low_20
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 909094 - 908900
Alignment:
| Q |
15 |
cagagactgaaatatctgtaagtttggagataaaagaatgtcaattgctaatatatttgtgattacataaaatccagtacattgtaaaagcatagaaatg |
114 |
Q |
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| T |
909094 |
cagagactgaaatatctgtaagtttggagataaaagaatgtcaattgctaatatatttgtgattacataaaatccagtacattgtaaaagcatagaaatg |
908995 |
T |
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| Q |
115 |
catacacaaagaaatcttaccaggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttctttt |
209 |
Q |
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| T |
908994 |
catacacaaagaaatcttaccaggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttctttt |
908900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 662846 - 663041
Alignment:
| Q |
15 |
cagagactgaaatatctgtaagtttggagataaaagaa-tgtcaattgctaatatatttgtgattacataaaatccagtacattgtaaaagcatagaaat |
113 |
Q |
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|||||||| | ||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
662846 |
cagagactaagatatctgcaagtttggagataaaaaaaatgtcaattactaatatatttgtgattacataaaatccagtgcattgtagaagcatagaaat |
662945 |
T |
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| Q |
114 |
gcatacacaaagaaatcttaccaggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttctttt |
209 |
Q |
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| T |
662946 |
gtatacacaaagaaatcttaccgggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttctttt |
663041 |
T |
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