View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8561_low_21 (Length: 223)
Name: NF8561_low_21
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 28400350 - 28400146
Alignment:
| Q |
1 |
attatcagagtatggagaaactgtatttttatctacttttgttcaattgttcaaacaagacatatataggctaaacaaagaaatgtaaaaggaaacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28400350 |
attatcagagtatggagaaactgtatttttatctacttttgttcaattgttcaaacaagacatatataggctaaacaaagaaatgtaaaaggaaacaaaa |
28400251 |
T |
|
| Q |
101 |
aataggcaattcctataattaactaagatgcagtaatttttaatactctcgcatttgaaatactatttgtttatctcataatatcagtcattttaaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28400250 |
aataggcaattcctataattaactaagatgcagtaatttttaatactctcacatttgaaatactatttgtttatctcataatatcagtcattttaaaata |
28400151 |
T |
|
| Q |
201 |
ccaat |
205 |
Q |
| |
|
||||| |
|
|
| T |
28400150 |
ccaat |
28400146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 28412679 - 28412626
Alignment:
| Q |
60 |
acatatataggctaaacaaag-aaatgtaaaaggaaacaaaaaataggcaattc |
112 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28412679 |
acatatataggctaaataaaggaaatgtaaaaggaaacaaaaaataggcaattc |
28412626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 6837655 - 6837762
Alignment:
| Q |
4 |
atcagagtatggagaaactgtatttttatctacttttg-ttcaattgttcaaacaagacatatataggctaaacaaagaaatgtaaaaggaaacaaaaaa |
102 |
Q |
| |
|
||||||||||||||||| | | ||||| ||||||||| ||||| || ||||||| | | ||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
6837655 |
atcagagtatggagaaattat-tttttctctacttttcattcaactgatcaaacactaaacatataggattaacaaagaaattgaaaaggaaacaaaaaa |
6837753 |
T |
|
| Q |
103 |
taggcaatt |
111 |
Q |
| |
|
||||||||| |
|
|
| T |
6837754 |
taggcaatt |
6837762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University